* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF12431.10
|
0.67
|
2
|
2462
|
opposite-strand
|
Transcriptional regulator
|
2
|
PF03606.17
|
0.67
|
2
|
1036
|
same-strand
|
C4-dicarboxylate anaerobic carrier
|
3
|
PF07017.13
|
0.67
|
2
|
-113
|
opposite-strand
|
Antimicrobial peptide resistance and lipid A acylation protein PagP
|
4
|
PF00313.24
|
1.0
|
3
|
121.0
|
opposite-strand
|
'Cold-shock' DNA-binding domain
|
5
|
PF02537.17
|
1.0
|
3
|
384.0
|
same-strand
|
CrcB-like protein, Camphor Resistance (CrcB)
|
6
|
PF02416.18
|
1.0
|
3
|
1777.0
|
opposite-strand
|
mttA/Hcf106 family
|
7
|
PF04055.23
|
1.0
|
3
|
2081
|
same-strand
|
Radical SAM superfamily
|
8
|
PF00795.24
|
1.0
|
3
|
860
|
opposite-strand
|
Carbon-nitrogen hydrolase
|
++ More..