Result : EXP00872
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00872 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 2917124 |
| Right | 2917165 |
| Strand | - |
| Nucleotide Sequence | GTGGAGGTGATACGAAATAATGAACCGTTGTCTGCTGCTTAA |
| Sequence | VEVIRNNEPLSAA |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 13 |
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| Conservation Analysis |
No. of Species: 5
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3827879 | 3827920 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 3086266 | 3086307 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 3024555 | 3024596 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 704695 | 704736 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 3027291 | 3027332 | - | NZ_AP014857.1 | Escherichia albertii |
| 6 | 3569853 | 3569894 | - | NZ_LR134340.1 | Escherichia marmotae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00491.23 | 0.8 | 4 | 3344 | same-strand | Arginase family |
| 2 | PF02784.18 | 1.0 | 5 | 355.0 | same-strand | Pyridoxal-dependent decarboxylase, pyridoxal binding domain |
| 3 | PF17810.3 | 1.0 | 5 | 355.0 | same-strand | Arginine decarboxylase helical bundle domain |
| 4 | PF17944.3 | 1.0 | 5 | 355.0 | same-strand | Arginine decarboxylase C-terminal helical extension |
| 5 | PF02773.18 | 1.0 | 5 | 399.0 | opposite-strand | S-adenosylmethionine synthetase, C-terminal domain |
| 6 | PF02772.18 | 1.0 | 5 | 399.0 | opposite-strand | S-adenosylmethionine synthetase, central domain |
| 7 | PF00438.22 | 1.0 | 5 | 399.0 | opposite-strand | S-adenosylmethionine synthetase, N-terminal domain |
| 8 | PF00083.26 | 1.0 | 5 | 1990.0 | opposite-strand | Sugar (and other) transporter |
| 9 | PF10263.11 | 0.8 | 4 | 3503 | opposite-strand | SprT-like family |
| 10 | PF17283.4 | 1.0 | 5 | 3503.0 | opposite-strand | SprT-like zinc ribbon domain |
| 11 | PF04231.15 | 1.0 | 5 | 4053.0 | opposite-strand | Endonuclease I |
++ More..