Result : EXP00870
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00870 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 1196783 |
| Right | 1196971 |
| Strand | - |
| Nucleotide Sequence | ATGCCCAGGCTGTCTGCGACAAGCTCGGCATTGAACTGCACACCGTTAACTTTGCTGCCGAGTACTGGGACAACGTCTTCGAACTGTTCCTTGCCGAATATAAAGCCGGTCGCACGCCGAATCCGGATATTCTGTGCAACAAAGAGATCAAATTTAAAGCCTTCCTCGAATTTGCCGCCGAAGATTTAG |
| Sequence | MPRLSATSSALNCTPLTLLPSTGTTSSNCSLPNIKPVARRIRIFCATKRSNLKPSSNLPPKI |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 62 |
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| Conservation Analysis |
No. of Species: 31
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1193416 | 1193604 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 1615279 | 1615467 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 1194600 | 1194788 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 1773169 | 1773357 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 840199 | 840387 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 1834368 | 1834556 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 1198278 | 1198466 | - | NZ_AP014857.1 | Escherichia albertii |
| 8 | 3173650 | 3173838 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 9 | 353559 | 353747 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 10 | 1322328 | 1322486 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 11 | 4714260 | 4714448 | - | NZ_CP033744.1 | Citrobacter freundii |
| 12 | 571429 | 571617 | - | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 1327927 | 1328085 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 14 | 2727935 | 2728123 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 15 | 1642884 | 1643084 | - | NZ_CP015581.1 | Tatumella citrea |
| 16 | 2785354 | 2785542 | + | NZ_LR134201.1 | Cedecea lapagei |
| 17 | 2607184 | 2607372 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 18 | 3709718 | 3709876 | - | NZ_CP053416.1 | Salmonella bongori |
| 19 | 752168 | 752335 | - | NZ_CP035688.1 | Vibrio metoecus |
| 20 | 1504361 | 1504528 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 21 | 2532763 | 2532921 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 22 | 3015134 | 3015301 | + | NC_016901.1 | Shewanella baltica OS678 |
| 23 | 1068911 | 1069078 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 24 | 1700152 | 1700337 | - | NZ_CP011797.1 | Reinekea forsetii |
| 25 | 458155 | 458358 | + | NZ_CP045302.1 | Azotobacter salinestris |
| 26 | 2402990 | 2403169 | - | NZ_CP067022.1 | Pseudomonas cannabina pv. alisalensis |
| 27 | 1772590 | 1772781 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 28 | 2757888 | 2758055 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 29 | 3699574 | 3699753 | + | NZ_CP042804.1 | Pseudomonas amygdali pv. tabaci str. ATCC 11528 |
| 30 | 2637364 | 2637537 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 31 | 2465891 | 2466046 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 32 | 3095648 | 3095845 | - | NZ_CP023559.1 | Salinicola tamaricis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00206.22 | 1.0 | 31 | 1430.0 | same-strand | Lyase |
| 2 | PF08328.13 | 1.0 | 31 | 1430.0 | same-strand | Adenylosuccinate lyase C-terminal |
| 3 | PF04356.14 | 1.0 | 31 | 784.0 | same-strand | Protein of unknown function (DUF489) |
| 4 | PF03054.18 | 1.0 | 31 | -188.0 | same-strand | tRNA methyl transferase |
| 5 | PF00293.30 | 0.94 | 29 | 237.5 | same-strand | NUDIX domain |
| 6 | PF00849.24 | 0.74 | 23 | 824.0 | same-strand | RNA pseudouridylate synthase |
| 7 | PF00180.22 | 0.68 | 21 | 1590.5 | opposite-strand | Isocitrate/isopropylmalate dehydrogenase |
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