Result : EXP00869
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00869 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 137960 |
| Right | 138061 |
| Strand | - |
| Nucleotide Sequence | TTGATAAAAGTCATATTTGCGTACATACCTACCCGGAAAGTCATCCTGAAGGCGGTTTATGTACCTTCCGCGCCGATATTGAAGTCTCTACCTGCGGCGTGA |
| Sequence | LIKVIFAYIPTRKVILKAVYVPSAPILKSLPAA |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 33 |
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| Conservation Analysis |
No. of Species: 39
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 135156 | 135257 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 133407 | 133517 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 139529 | 139639 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 3589233 | 3589343 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 3690475 | 3690585 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 107047 | 107148 | - | NZ_CP028271.1 | Mixta intestinalis |
| 7 | 2367737 | 2367838 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 8 | 1965739 | 1965822 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 9 | 2895627 | 2895737 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 10 | 800867 | 800977 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 11 | 779313 | 779414 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 12 | 2937297 | 2937407 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 13 | 265778 | 265882 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 14 | 3049461 | 3049571 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 15 | 3333763 | 3333846 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 16 | 2482847 | 2482957 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 17 | 1728855 | 1728965 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 18 | 3784899 | 3785009 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 19 | 3679311 | 3679412 | - | NZ_CP049115.1 | Pantoea stewartii |
| 20 | 4755671 | 4755754 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 21 | 934238 | 934348 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 22 | 263961 | 264065 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 23 | 261640 | 261744 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 24 | 3839401 | 3839514 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 25 | 3311395 | 3311508 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 26 | 3661272 | 3661382 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 27 | 3666682 | 3666792 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 28 | 319319 | 319414 | - | NZ_CP009888.1 | Pseudoalteromonas piratica |
| 29 | 4248879 | 4248983 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 30 | 1331417 | 1331500 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 31 | 158399 | 158500 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 32 | 3348639 | 3348743 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 33 | 823819 | 823932 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 34 | 2836319 | 2836414 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 35 | 3553468 | 3553551 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 36 | 2756285 | 2756368 | + | NZ_CP067057.1 | Rahnella aceris |
| 37 | 210585 | 210668 | + | NC_007481.1 | Pseudoalteromonas translucida |
| 38 | 3523395 | 3523505 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 39 | 3745753 | 3745848 | - | NZ_CP009787.1 | Yersinia rohdei |
| 40 | 2963179 | 2963262 | - | NZ_CP011078.1 | Yersinia ruckeri |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02675.17 | 1.0 | 39 | -104.0 | same-strand | S-adenosylmethionine decarboxylase |
| 2 | PF01564.19 | 0.82 | 32 | 344 | same-strand | Spermine/spermidine synthase domain |
| 3 | PF17284.4 | 0.85 | 33 | 344.0 | same-strand | Spermidine synthase tetramerisation domain |
| 4 | PF13649.8 | 0.77 | 30 | 344 | same-strand | Methyltransferase domain |
| 5 | PF07732.17 | 0.62 | 24 | 1817 | opposite-strand | Multicopper oxidase |
| 6 | PF07731.16 | 0.62 | 24 | 1817 | opposite-strand | Multicopper oxidase |
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