* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13098.8
|
1.0
|
3
|
2352.0
|
same-strand
|
Thioredoxin-like domain
|
2
|
PF10411.11
|
1.0
|
3
|
2352.0
|
same-strand
|
Disulfide bond isomerase protein N-terminus
|
3
|
PF00589.24
|
1.0
|
3
|
1431.0
|
same-strand
|
Phage integrase family
|
4
|
PF02899.19
|
1.0
|
3
|
1431.0
|
same-strand
|
Phage integrase, N-terminal SAM-like domain
|
5
|
PF13495.8
|
1.0
|
3
|
1431.0
|
same-strand
|
Phage integrase, N-terminal SAM-like domain
|
6
|
PF00258.27
|
1.0
|
3
|
798.0
|
opposite-strand
|
Flavodoxin
|
7
|
PF07254.14
|
1.0
|
3
|
351.0
|
same-strand
|
Membrane-bound toxin component of toxin-antitoxin system
|
8
|
PF03937.18
|
1.0
|
3
|
104.0
|
same-strand
|
Flavinator of succinate dehydrogenase
|
9
|
PF03006.22
|
1.0
|
3
|
1184.5
|
same-strand
|
Haemolysin-III related
|
10
|
PF04266.16
|
0.67
|
2
|
2067
|
same-strand
|
ASCH domain
|
11
|
PF00232.20
|
0.67
|
2
|
2422
|
opposite-strand
|
Glycosyl hydrolase family 1
|
12
|
PF13561.8
|
0.67
|
2
|
3912.5
|
same-strand
|
Enoyl-(Acyl carrier protein) reductase
|
13
|
PF00106.27
|
0.67
|
2
|
3912.5
|
same-strand
|
short chain dehydrogenase
|
14
|
PF08659.12
|
0.67
|
2
|
3912.5
|
same-strand
|
KR domain
|
++ More..