Result : EXP00866
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00866 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 2872034 |
| Right | 2872105 |
| Strand | - |
| Nucleotide Sequence | GTGCTTTCACTACGCGATCTGTGCCTTCTGCGAGGCGACTTCCAAAAAAATGAAGCCATTGAATTGTTGTGA |
| Sequence | VLSLRDLCLLRGDFQKNEAIELL |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 23 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3041174 | 3041245 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 655250 | 655321 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 3 | 2975088 | 2975159 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 3779450 | 3779521 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13098.8 | 1.0 | 3 | 2352.0 | same-strand | Thioredoxin-like domain |
| 2 | PF10411.11 | 1.0 | 3 | 2352.0 | same-strand | Disulfide bond isomerase protein N-terminus |
| 3 | PF00589.24 | 1.0 | 3 | 1431.0 | same-strand | Phage integrase family |
| 4 | PF02899.19 | 1.0 | 3 | 1431.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 5 | PF13495.8 | 1.0 | 3 | 1431.0 | same-strand | Phage integrase, N-terminal SAM-like domain |
| 6 | PF00258.27 | 1.0 | 3 | 798.0 | opposite-strand | Flavodoxin |
| 7 | PF07254.14 | 1.0 | 3 | 351.0 | same-strand | Membrane-bound toxin component of toxin-antitoxin system |
| 8 | PF03937.18 | 1.0 | 3 | 104.0 | same-strand | Flavinator of succinate dehydrogenase |
| 9 | PF03006.22 | 1.0 | 3 | 1184.5 | same-strand | Haemolysin-III related |
| 10 | PF04266.16 | 0.67 | 2 | 2067 | same-strand | ASCH domain |
| 11 | PF00232.20 | 0.67 | 2 | 2422 | opposite-strand | Glycosyl hydrolase family 1 |
| 12 | PF13561.8 | 0.67 | 2 | 3912.5 | same-strand | Enoyl-(Acyl carrier protein) reductase |
| 13 | PF00106.27 | 0.67 | 2 | 3912.5 | same-strand | short chain dehydrogenase |
| 14 | PF08659.12 | 0.67 | 2 | 3912.5 | same-strand | KR domain |
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