* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03180.16
|
1.0
|
3
|
8099
|
same-strand
|
NlpA lipoprotein
|
2
|
PF00528.24
|
1.0
|
3
|
7406
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
3
|
PF00005.29
|
1.0
|
3
|
6382
|
same-strand
|
ABC transporter
|
4
|
PF09383.12
|
1.0
|
3
|
6382
|
same-strand
|
NIL domain
|
5
|
PF02463.21
|
1.0
|
3
|
6382
|
same-strand
|
RecF/RecN/SMC N terminal domain
|
6
|
PF13401.8
|
1.0
|
3
|
6382
|
same-strand
|
AAA domain
|
7
|
PF13242.8
|
1.0
|
3
|
5622
|
opposite-strand
|
HAD-hyrolase-like
|
8
|
PF00248.23
|
1.0
|
3
|
78
|
opposite-strand
|
Aldo/keto reductase family
|
9
|
PF03466.22
|
1.0
|
3
|
878
|
same-strand
|
LysR substrate binding domain
|
10
|
PF00126.29
|
1.0
|
3
|
878
|
same-strand
|
Bacterial regulatory helix-turn-helix protein, lysR family
|
11
|
PF03372.25
|
1.0
|
3
|
2055
|
opposite-strand
|
Endonuclease/Exonuclease/phosphatase family
|
12
|
PF08241.14
|
1.0
|
3
|
2912
|
opposite-strand
|
Methyltransferase domain
|
13
|
PF13649.8
|
1.0
|
3
|
2912
|
opposite-strand
|
Methyltransferase domain
|
14
|
PF08242.14
|
1.0
|
3
|
2912
|
opposite-strand
|
Methyltransferase domain
|
15
|
PF01476.22
|
0.67
|
2
|
3619.0
|
same-strand
|
LysM domain
|
16
|
PF01464.22
|
0.67
|
2
|
3619.0
|
same-strand
|
Transglycosylase SLT domain
|
17
|
PF13489.8
|
0.67
|
2
|
3510.0
|
opposite-strand
|
Methyltransferase domain
|
++ More..