* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00009.29
|
1.0
|
5
|
1554
|
same-strand
|
Elongation factor Tu GTP binding domain
|
2
|
PF03764.20
|
1.0
|
5
|
1554.0
|
same-strand
|
Elongation factor G, domain IV
|
3
|
PF14492.8
|
1.0
|
5
|
1554.0
|
same-strand
|
Elongation Factor G, domain III
|
4
|
PF00679.26
|
1.0
|
5
|
1554.0
|
same-strand
|
Elongation factor G C-terminus
|
5
|
PF03144.27
|
1.0
|
5
|
1554
|
same-strand
|
Elongation factor Tu domain 2
|
6
|
PF00177.23
|
1.0
|
5
|
987.0
|
same-strand
|
Ribosomal protein S7p/S5e
|
7
|
PF00164.27
|
1.0
|
5
|
516.0
|
same-strand
|
Ribosomal protein S12/S23
|
8
|
PF04077.14
|
1.0
|
5
|
103.0
|
same-strand
|
DsrH like protein
|
9
|
PF02635.17
|
1.0
|
5
|
85.0
|
same-strand
|
DsrE/DsrF-like family
|
10
|
PF08348.13
|
1.0
|
5
|
603.0
|
same-strand
|
YheO-like PAS domain
|
11
|
PF13309.8
|
1.0
|
5
|
603.0
|
same-strand
|
HTH domain
|
12
|
PF13384.8
|
1.0
|
5
|
603.0
|
same-strand
|
Homeodomain-like domain
|
13
|
PF00254.30
|
1.0
|
5
|
1492
|
same-strand
|
FKBP-type peptidyl-prolyl cis-trans isomerase
|
14
|
PF01346.20
|
1.0
|
5
|
1492.0
|
same-strand
|
Domain amino terminal to FKBP-type peptidyl-prolyl isomerase
|
15
|
PF04102.14
|
1.0
|
5
|
2524.5
|
opposite-strand
|
SlyX
|
++ More..