* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04391.14
|
1.0
|
4
|
914
|
same-strand
|
Protein of unknown function (DUF533)
|
2
|
PF13995.8
|
1.0
|
4
|
231
|
same-strand
|
YebF-like protein
|
3
|
PF07130.14
|
0.75
|
3
|
-44.0
|
same-strand
|
YebG protein
|
4
|
PF02222.24
|
1.0
|
4
|
216
|
opposite-strand
|
ATP-grasp domain
|
5
|
PF02655.16
|
1.0
|
4
|
216
|
opposite-strand
|
ATP-grasp domain
|
6
|
PF01081.21
|
1.0
|
4
|
1450
|
same-strand
|
KDPG and KHG aldolase
|
7
|
PF00920.23
|
1.0
|
4
|
2128
|
same-strand
|
Dehydratase family
|
8
|
PF02781.18
|
1.0
|
4
|
4174
|
same-strand
|
Glucose-6-phosphate dehydrogenase, C-terminal domain
|
9
|
PF00479.24
|
1.0
|
4
|
4174
|
same-strand
|
Glucose-6-phosphate dehydrogenase, NAD binding domain
|
10
|
PF02897.17
|
0.75
|
3
|
1779
|
same-strand
|
Prolyl oligopeptidase, N-terminal beta-propeller domain
|
11
|
PF00326.23
|
0.75
|
3
|
1779
|
same-strand
|
Prolyl oligopeptidase family
|
++ More..