* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01985.23
|
0.9
|
9
|
4560.5
|
opposite-strand
|
CRS1 / YhbY (CRM) domain
|
2
|
PF03449.17
|
1.0
|
10
|
3929
|
same-strand
|
Transcription elongation factor, N-terminal
|
3
|
PF01272.21
|
1.0
|
10
|
3929
|
same-strand
|
Transcription elongation factor, GreA/GreB, C-term
|
4
|
PF02113.17
|
1.0
|
10
|
2248
|
opposite-strand
|
D-Ala-D-Ala carboxypeptidase 3 (S13) family
|
5
|
PF01018.24
|
1.0
|
10
|
1035
|
same-strand
|
GTP1/OBG
|
6
|
PF01926.25
|
1.0
|
10
|
1035
|
same-strand
|
50S ribosome-binding GTPase
|
7
|
PF00892.22
|
1.0
|
10
|
54
|
same-strand
|
EamA-like transporter family
|
8
|
PF01016.21
|
1.0
|
10
|
23
|
same-strand
|
Ribosomal L27 protein
|
9
|
PF00829.23
|
0.8
|
8
|
301
|
same-strand
|
Ribosomal prokaryotic L21 protein
|
10
|
PF00348.19
|
1.0
|
10
|
871
|
opposite-strand
|
Polyprenyl synthetase
|
11
|
PF13693.8
|
1.0
|
10
|
2069
|
opposite-strand
|
Winged helix-turn-helix DNA-binding
|
12
|
PF00275.22
|
1.0
|
10
|
2396
|
same-strand
|
EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
|
++ More..