* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00528.24
|
0.6
|
3
|
3725
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
2
|
PF00496.24
|
0.6
|
3
|
2067.0
|
same-strand
|
Bacterial extracellular solute-binding proteins, family 5 Middle
|
3
|
PF10820.10
|
0.6
|
3
|
1509.0
|
same-strand
|
Protein of unknown function (DUF2543)
|
4
|
PF00324.23
|
0.8
|
4
|
-10
|
same-strand
|
Amino acid permease
|
5
|
PF13520.8
|
0.8
|
4
|
-10
|
same-strand
|
Amino acid permease
|
6
|
PF00120.26
|
1.0
|
5
|
146.0
|
same-strand
|
Glutamine synthetase, catalytic domain
|
7
|
PF07722.15
|
0.8
|
4
|
1779
|
opposite-strand
|
Peptidase C26
|
8
|
PF07883.13
|
1.0
|
5
|
2567.0
|
opposite-strand
|
Cupin domain
|
9
|
PF01381.24
|
1.0
|
5
|
2567.0
|
opposite-strand
|
Helix-turn-helix
|
10
|
PF13560.8
|
1.0
|
5
|
2567.0
|
opposite-strand
|
Helix-turn-helix domain
|
11
|
PF12844.9
|
1.0
|
5
|
2567.0
|
opposite-strand
|
Helix-turn-helix domain
|
12
|
PF00171.24
|
0.8
|
4
|
3276
|
opposite-strand
|
Aldehyde dehydrogenase family
|
13
|
PF01266.26
|
0.8
|
4
|
4765
|
opposite-strand
|
FAD dependent oxidoreductase
|
++ More..