* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03966.18
|
1.0
|
9
|
2698.0
|
same-strand
|
Trm112p-like protein
|
2
|
PF02348.21
|
1.0
|
9
|
1955.0
|
same-strand
|
Cytidylyltransferase
|
3
|
PF02698.19
|
1.0
|
9
|
152.0
|
opposite-strand
|
DUF218 domain
|
4
|
PF13847.8
|
0.89
|
8
|
-218
|
same-strand
|
Methyltransferase domain
|
5
|
PF13649.8
|
1.0
|
9
|
-218.0
|
same-strand
|
Methyltransferase domain
|
6
|
PF08241.14
|
1.0
|
9
|
-218.0
|
same-strand
|
Methyltransferase domain
|
7
|
PF08242.14
|
1.0
|
9
|
-218.0
|
same-strand
|
Methyltransferase domain
|
8
|
PF17192.6
|
1.0
|
9
|
548.5
|
same-strand
|
MukF middle domain
|
9
|
PF17193.6
|
1.0
|
9
|
548.5
|
same-strand
|
MukF C-terminal domain
|
10
|
PF03882.16
|
1.0
|
9
|
548.5
|
same-strand
|
MukF winged-helix domain
|
11
|
PF04288.15
|
1.0
|
9
|
1851.5
|
same-strand
|
MukE-like family
|
12
|
PF04310.14
|
1.0
|
9
|
2555.5
|
same-strand
|
MukB N-terminal
|
13
|
PF16330.7
|
1.0
|
9
|
2555.5
|
same-strand
|
MukB hinge domain
|
14
|
PF13558.8
|
1.0
|
9
|
2555.5
|
same-strand
|
Putative exonuclease SbcCD, C subunit
|
15
|
PF03734.16
|
0.89
|
8
|
7276
|
same-strand
|
L,D-transpeptidase catalytic domain
|
16
|
PF20142.1
|
0.89
|
8
|
7276
|
same-strand
|
Scaffold domain
|
17
|
PF13489.8
|
0.67
|
6
|
-204.5
|
same-strand
|
Methyltransferase domain
|
++ More..