Result : EXP00765
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00765 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 1965374 |
| Right | 1965475 |
| Strand | + |
| Nucleotide Sequence | ATGACATCAGAATCCTGCGCACTTAATACAATATCTGCCAGCAAACCTTTGCGGGCAAATGCGTCATCAATACGTGAGCGCCCCGTAATCCCCTGTCGGTAA |
| Sequence | MTSESCALNTISASKPLRANASSIRERPVIPCR |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 33 |
++ More..
| Conservation Analysis |
No. of Species: 186
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2060226 | 2060327 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 2729833 | 2729934 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 2077564 | 2077665 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 4 | 2608636 | 2608737 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 2434884 | 2434985 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 6 | 1113471 | 1113572 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 7 | 2035909 | 2036013 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 8 | 1607091 | 1607195 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 9 | 2591751 | 2591855 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 10 | 1730476 | 1730577 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 11 | 1401454 | 1401540 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 12 | 5339185 | 5339286 | + | NZ_CP026047.1 | Raoultella planticola |
| 13 | 1872348 | 1872449 | - | NZ_CP041247.1 | Raoultella electrica |
| 14 | 1237081 | 1237182 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 15 | 63706 | 63810 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 16 | 2257320 | 2257424 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 17 | 1444437 | 1444541 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 18 | 1917510 | 1917611 | - | NZ_CP050508.1 | Raoultella terrigena |
| 19 | 3323495 | 3323596 | + | NZ_CP050508.1 | Raoultella terrigena |
| 20 | 2717003 | 2717107 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 21 | 1725795 | 1725896 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 22 | 2559654 | 2559740 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 23 | 3431434 | 3431538 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 24 | 2225392 | 2225493 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 25 | 1946568 | 1946669 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 26 | 2818316 | 2818420 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 27 | 1146303 | 1146404 | + | NZ_CP038469.1 | Citrobacter tructae |
| 28 | 4286876 | 4286980 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 29 | 728327 | 728431 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 30 | 1781566 | 1781667 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 31 | 2983336 | 2983437 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 32 | 1840460 | 1840561 | - | NZ_CP054254.1 | Klebsiella variicola |
| 33 | 3005263 | 3005367 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 34 | 1724658 | 1724765 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 35 | 2964182 | 2964286 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 36 | 3117251 | 3117349 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 37 | 378802 | 378903 | + | NZ_CP033744.1 | Citrobacter freundii |
| 38 | 857290 | 857391 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 39 | 4142901 | 4143002 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 40 | 391398 | 391502 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 41 | 468525 | 468629 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 42 | 1690200 | 1690304 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 43 | 2373679 | 2373783 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 44 | 1642339 | 1642443 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 45 | 3069743 | 3069847 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 46 | 2254962 | 2255066 | + | NZ_LT615367.1 | Dickeya aquatica |
| 47 | 594830 | 594931 | + | NZ_CP049115.1 | Pantoea stewartii |
| 48 | 2213711 | 2213815 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 49 | 2852562 | 2852666 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 50 | 5342715 | 5342816 | + | NZ_CP011254.1 | Serratia fonticola |
| 51 | 4983924 | 4984010 | + | NZ_CP011254.1 | Serratia fonticola |
| 52 | 1587955 | 1588074 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 53 | 918584 | 918685 | - | NZ_CP067057.1 | Rahnella aceris |
| 54 | 1690851 | 1690937 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 55 | 2112403 | 2112489 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 56 | 4139950 | 4140051 | + | NZ_CP065640.1 | Serratia rubidaea |
| 57 | 2404966 | 2405067 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 58 | 1776857 | 1776961 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 59 | 1756020 | 1756136 | - | NZ_CP065534.1 | Lonsdalea populi |
| 60 | 2434313 | 2434399 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 61 | 4155863 | 4155964 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 62 | 1285047 | 1285148 | - | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 63 | 1473599 | 1473703 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 64 | 2288792 | 2288893 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 65 | 2313381 | 2313467 | - | NZ_CP025799.1 | Dickeya zeae |
| 66 | 1926531 | 1926632 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 67 | 638459 | 638557 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 68 | 1973849 | 1973935 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 69 | 2004609 | 2004725 | + | NZ_CP043869.1 | Neptunomonas concharum |
| 70 | 2976361 | 2976477 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 71 | 2231410 | 2231496 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 72 | 2865419 | 2865517 | + | NZ_CP051883.1 | Aeromonas salmonicida |
| 73 | 890966 | 891070 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 74 | 4117443 | 4117547 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 75 | 1469112 | 1469213 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 76 | 4004590 | 4004688 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 77 | 1142810 | 1142911 | - | NC_021291.1 | Spiribacter salinus M19-40 |
| 78 | 5897193 | 5897285 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 79 | 5928876 | 5928968 | - | NZ_CP065748.1 | Delftia lacustris |
| 80 | 1809275 | 1809376 | + | NZ_CP051183.1 | Bermanella marisrubri |
| 81 | 2989577 | 2989678 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 82 | 3996100 | 3996201 | + | NZ_CP013232.1 | Collimonas fungivorans |
| 83 | 2765653 | 2765742 | + | NC_013851.1 | Allochromatium vinosum DSM 180 |
| 84 | 5340094 | 5340195 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 85 | 402696 | 402797 | - | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 86 | 2382018 | 2382104 | + | NZ_CP054840.1 | Acidovorax antarcticus |
| 87 | 5310653 | 5310754 | + | NZ_CP028324.1 | Massilia armeniaca |
| 88 | 2160131 | 2160232 | + | NZ_CP015581.1 | Tatumella citrea |
| 89 | 6329348 | 6329437 | + | NZ_LR134302.1 | Achromobacter spanius |
| 90 | 1190070 | 1190156 | - | NZ_CP014322.1 | Alteromonas addita |
| 91 | 5397694 | 5397795 | + | NZ_CP048832.1 | Janthinobacterium lividum |
| 92 | 2760976 | 2761065 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 93 | 973978 | 974079 | - | NZ_CP036401.1 | Massilia albidiflava |
| 94 | 1783440 | 1783541 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 95 | 1280724 | 1280825 | + | NZ_CP032134.1 | Acinetobacter chinensis |
| 96 | 1739860 | 1739961 | - | NC_020888.1 | Thalassolituus oleivorans MIL-1 |
| 97 | 338573 | 338659 | - | NZ_CP060790.1 | Acidovorax monticola |
| 98 | 3172861 | 3172962 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 99 | 116148 | 116249 | - | NZ_CP040449.1 | Aeromonas simiae |
| 100 | 1773625 | 1773726 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 101 | 2370598 | 2370702 | + | NZ_CP046904.1 | Massilia flava |
| 102 | 281395 | 281499 | + | NZ_CP022684.1 | Ketobacter alkanivorans |
| 103 | 2138286 | 2138390 | + | NZ_CP019650.1 | Microbulbifer agarilyticus |
| 104 | 649493 | 649594 | + | NZ_CP072133.1 | Pseudoalteromonas xiamenensis |
| 105 | 3138251 | 3138355 | + | NZ_CP017754.1 | Cupriavidus malaysiensis |
| 106 | 923764 | 923865 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 107 | 2760460 | 2760561 | + | NZ_AP017372.2 | Halorhodospira halochloris |
| 108 | 1658738 | 1658839 | - | NZ_CP062158.2 | Pseudomonas lundensis |
| 109 | 3245677 | 3245778 | - | NZ_CP026364.1 | Proteus hauseri |
| 110 | 1905931 | 1906020 | - | NZ_CP021359.1 | Acidovorax carolinensis |
| 111 | 1167575 | 1167679 | - | NZ_CP030788.1 | Vibrio campbellii |
| 112 | 1953290 | 1953394 | + | NC_017506.1 | Marinobacter adhaerens HP15 |
| 113 | 1879527 | 1879613 | - | NZ_CP011930.1 | Herbaspirillum seropedicae |
| 114 | 1535978 | 1536082 | + | NZ_CP016210.1 | Azoarcus olearius |
| 115 | 3412396 | 3412500 | - | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 116 | 703205 | 703306 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 117 | 2397088 | 2397189 | + | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 118 | 1868447 | 1868545 | - | NZ_CP045650.1 | Acinetobacter wanghuae |
| 119 | 2738621 | 2738725 | - | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 120 | 920168 | 920272 | + | NZ_CP011381.2 | Moraxella bovoculi |
| 121 | 1677823 | 1677924 | - | NZ_CP021455.1 | Comamonas serinivorans |
| 122 | 3504884 | 3504976 | + | NZ_CP038034.1 | Achromobacter insolitus |
| 123 | 2390668 | 2390769 | + | NZ_CP062803.1 | Cupriavidus basilensis |
| 124 | 3909016 | 3909120 | - | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 125 | 4383865 | 4383966 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 126 | 2097036 | 2097122 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 127 | 1037078 | 1037197 | - | NZ_CP040021.1 | Salinivibrio kushneri |
| 128 | 1566487 | 1566579 | - | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 129 | 3374605 | 3374706 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 130 | 857011 | 857115 | - | NC_014532.2 | Halomonas elongata DSM 2581 |
| 131 | 702440 | 702526 | - | NZ_AP012547.1 | Sulfuritalea hydrogenivorans sk43H |
| 132 | 2454246 | 2454350 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 133 | 2076382 | 2076468 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 134 | 1878067 | 1878153 | - | NZ_CP037993.1 | Herbaspirillum huttiense |
| 135 | 1669495 | 1669596 | - | NZ_CP013236.1 | Collimonas pratensis |
| 136 | 1163895 | 1163999 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 137 | 1980507 | 1980611 | - | NZ_CP043042.1 | Marinobacter fonticola |
| 138 | 4130803 | 4130907 | - | NZ_LS483250.1 | Moritella yayanosii |
| 139 | 1926800 | 1926886 | + | NZ_CP016022.1 | Ralstonia insidiosa |
| 140 | 2554597 | 2554698 | - | NC_005966.1 | Acinetobacter baylyi ADP1 |
| 141 | 2929100 | 2929201 | - | NZ_CP047241.1 | Aquitalea denitrificans |
| 142 | 2514350 | 2514469 | + | NC_013456.1 | Vibrio antiquarius |
| 143 | 1737324 | 1737428 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 144 | 1748878 | 1748964 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 145 | 2135778 | 2135882 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 146 | 119988 | 120092 | + | NZ_CP012678.1 | Psychrobacter urativorans |
| 147 | 2547282 | 2547383 | + | NZ_CP010554.1 | Rugosibacter aromaticivorans |
| 148 | 3276060 | 3276161 | - | NZ_CP041660.1 | Catenovulum sediminis |
| 149 | 644016 | 644114 | - | NZ_AP022188.1 | Aeromonas media |
| 150 | 1203957 | 1204061 | + | NZ_CP047476.1 | Vibrio astriarenae |
| 151 | 1713714 | 1713800 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 152 | 2505531 | 2505623 | - | NC_015138.1 | Acidovorax avenae subsp. avenae ATCC 19860 |
| 153 | 957206 | 957310 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 154 | 2306515 | 2306616 | + | NZ_CP043420.1 | Kushneria phosphatilytica |
| 155 | 2900051 | 2900155 | + | NZ_CP009365.1 | Pseudomonas soli |
| 156 | 3356019 | 3356123 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 157 | 627626 | 627727 | + | NC_011761.1 | Acidithiobacillus ferrooxidans ATCC 23270 |
| 158 | 1384109 | 1384213 | + | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 159 | 1294863 | 1294955 | - | NZ_CP053986.1 | Achromobacter denitrificans |
| 160 | 4542212 | 4542313 | + | NZ_CP012400.2 | Pseudomonas yamanorum |
| 161 | 1724309 | 1724407 | + | NC_014722.1 | Mycetohabitans rhizoxinica HKI 454 |
| 162 | 3706496 | 3706600 | + | NZ_CP068034.2 | Pseudomonas syringae |
| 163 | 1896007 | 1896111 | - | NZ_CP013414.1 | Burkholderia ubonensis |
| 164 | 1728089 | 1728193 | - | NZ_CP020737.1 | Paraburkholderia acidophila |
| 165 | 2215161 | 2215265 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 166 | 522480 | 522566 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 167 | 2330605 | 2330706 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 168 | 990743 | 990844 | + | NZ_CP044483.1 | Acinetobacter schindleri |
| 169 | 2556708 | 2556794 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 170 | 3344074 | 3344175 | - | NZ_AP014630.1 | Acinetobacter guillouiae |
| 171 | 1631254 | 1631340 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 172 | 2069429 | 2069533 | - | NZ_CP002580.1 | Burkholderia plantarii |
| 173 | 3909595 | 3909699 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 174 | 378950 | 379054 | - | NZ_CP035900.1 | Burkholderia glumae |
| 175 | 2216768 | 2216872 | + | NZ_CP009727.1 | Burkholderia mallei |
| 176 | 1796735 | 1796821 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 177 | 3349743 | 3349835 | + | NC_008752.1 | Acidovorax citrulli AAC00-1 |
| 178 | 3448212 | 3448316 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 179 | 2741631 | 2741732 | + | NZ_CP039731.1 | Aquitalea aquatilis |
| 180 | 960010 | 960114 | + | NZ_CP011158.1 | Moraxella ovis |
| 181 | 2191824 | 2191910 | - | NZ_CP008849.1 | Alteromonas australica |
| 182 | 847879 | 847971 | + | NZ_CP064338.1 | Schlegelella thermodepolymerans |
| 183 | 2427029 | 2427133 | + | NZ_CP039287.1 | Cupriavidus necator H16 |
| 184 | 2318670 | 2318774 | - | NC_023018.2 | Pandoraea pnomenusa |
| 185 | 549401 | 549487 | - | NZ_CP021376.1 | Oceanisphaera avium |
| 186 | 2309337 | 2309438 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 187 | 2103520 | 2103639 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 188 | 1700116 | 1700202 | - | NZ_LR134531.1 | Pragia fontium |
| 189 | 1570654 | 1570740 | + | NZ_CP035688.1 | Vibrio metoecus |
| 190 | 3240970 | 3241071 | - | NZ_CP021358.1 | Kushneria marisflavi |
| 191 | 3143285 | 3143386 | + | NZ_CP048878.1 | Spartinivicinus ruber |
| 192 | 1853782 | 1853886 | - | NZ_CP013459.1 | Burkholderia stagnalis |
| 193 | 2144036 | 2144140 | + | NZ_CP032519.1 | Cupriavidus oxalaticus |
| 194 | 1785736 | 1785837 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 195 | 4742845 | 4742946 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 196 | 1906588 | 1906689 | - | NZ_CP011835.1 | Azotobacter chroococcum |
| 197 | 2263432 | 2263518 | + | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 198 | 1287818 | 1287922 | - | NZ_CP054626.1 | Cupriavidus gilardii |
| 199 | 318184 | 318285 | - | NZ_CP072793.1 | Thiothrix unzii |
| 200 | 1997119 | 1997223 | - | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 201 | 1427060 | 1427164 | + | NZ_CP045871.1 | Litoricola lipolytica |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03466.22 | 1.0 | 186 | -101 | opposite-strand | LysR substrate binding domain |
| 2 | PF00126.29 | 1.0 | 186 | -101.0 | opposite-strand | Bacterial regulatory helix-turn-helix protein, lysR family |
++ More..