Result : EXP00747
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00747 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 2529479 |
| Right | 2529652 |
| Strand | + |
| Nucleotide Sequence | ATGTTCAATGGGTTATTGATCCACTGGATGGCACTACCAACTTTATCAAACGTCTGCCGCACTTCGCGGTATCTATCGCCGTTCGTATCAAAGGCCGCACCGAAGTTGCTGTGGTATACGATCCTATGCGTAACGAACTGTTCACCGCCACTCGCGGTCAGGGCGCACAGCTGA |
| Sequence | MFNGLLIHWMALPTLSNVCRTSRYLSPFVSKAAPKLLWYTILCVTNCSPPLAVRAHS |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 57 |
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| Conservation Analysis |
No. of Species: 81
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1080405 | 1080578 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 3384310 | 3384483 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 2663674 | 2663847 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 2648526 | 2648699 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 4165326 | 4165499 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 2626513 | 2626686 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 3189428 | 3189601 | + | NZ_LR134340.1 | Escherichia marmotae |
| 8 | 4395002 | 4395175 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 9 | 644034 | 644207 | + | NZ_CP053416.1 | Salmonella bongori |
| 10 | 3585025 | 3585198 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 11 | 1258233 | 1258406 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 12 | 396423 | 396596 | + | NZ_CP026047.1 | Raoultella planticola |
| 13 | 901400 | 901546 | - | NZ_CP050150.1 | Hafnia alvei |
| 14 | 1285706 | 1285879 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 15 | 1301152 | 1301325 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 16 | 1270545 | 1270718 | - | NZ_CP041247.1 | Raoultella electrica |
| 17 | 1445843 | 1446016 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 18 | 3434275 | 3434421 | + | NZ_CP032487.1 | Yersinia hibernica |
| 19 | 2211668 | 2211841 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 20 | 2783251 | 2783424 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 21 | 78732 | 78905 | + | NZ_CP007230.1 | Yersinia similis |
| 22 | 3487663 | 3487836 | + | NZ_CP046293.1 | Yersinia intermedia |
| 23 | 1217362 | 1217535 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 24 | 3317553 | 3317699 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 25 | 3964565 | 3964738 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 26 | 3514245 | 3514418 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 27 | 1281184 | 1281357 | - | NZ_CP054254.1 | Klebsiella variicola |
| 28 | 740679 | 740825 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 29 | 1245829 | 1245975 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 30 | 3206731 | 3206904 | + | NZ_CP061511.1 | Mixta calida |
| 31 | 3976675 | 3976848 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 32 | 52044 | 52217 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 33 | 3799773 | 3799946 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 34 | 1213200 | 1213373 | - | NZ_CP043727.1 | Yersinia canariae |
| 35 | 3489091 | 3489264 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 36 | 2565585 | 2565758 | + | NZ_CP028271.1 | Mixta intestinalis |
| 37 | 5008510 | 5008683 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 38 | 4151675 | 4151821 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 39 | 3215099 | 3215272 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 40 | 1279072 | 1279245 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 41 | 493408 | 493581 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 42 | 3141134 | 3141307 | + | NZ_CP015581.1 | Tatumella citrea |
| 43 | 2354656 | 2354802 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 44 | 3863732 | 3863905 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 45 | 1793028 | 1793201 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 46 | 1131458 | 1131631 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 47 | 1236579 | 1236725 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 48 | 2635296 | 2635469 | - | NZ_CP019706.1 | Pantoea alhagi |
| 49 | 1271690 | 1271836 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 50 | 2684668 | 2684841 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 51 | 3562360 | 3562506 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 52 | 3475069 | 3475242 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 53 | 3761794 | 3761967 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 54 | 3592644 | 3592817 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 55 | 3386205 | 3386351 | + | NZ_CP025799.1 | Dickeya zeae |
| 56 | 785353 | 785499 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 57 | 2956877 | 2957023 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 58 | 2003859 | 2004005 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 59 | 466896 | 467042 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 60 | 1457392 | 1457538 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 61 | 299394 | 299540 | + | NZ_CP026364.1 | Proteus hauseri |
| 62 | 1159520 | 1159693 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 63 | 3540939 | 3541085 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 64 | 1334567 | 1334713 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 65 | 1004237 | 1004383 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 66 | 1034236 | 1034409 | - | NZ_CP038853.1 | Pantoea vagans |
| 67 | 434393 | 434539 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 68 | 4945603 | 4945776 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 69 | 1260896 | 1261042 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 70 | 3768115 | 3768288 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 71 | 3546623 | 3546769 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 72 | 1060479 | 1060652 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 73 | 2590337 | 2590483 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 74 | 3402813 | 3402959 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 75 | 2998789 | 2998935 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 76 | 1274218 | 1274364 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 77 | 1043501 | 1043647 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 78 | 2716472 | 2716618 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 79 | 2648647 | 2648793 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 80 | 2999639 | 2999812 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 81 | 1769943 | 1770089 | - | NZ_CP022272.1 | Shewanella marisflavi |
| 82 | 251990 | 252136 | + | NZ_CP011104.1 | Photorhabdus thracensis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12832.9 | 0.6 | 49 | 3457.5 | opposite-strand | MFS 1 like family |
| 2 | PF07690.18 | 0.62 | 50 | 3456 | opposite-strand | Major Facilitator Superfamily |
| 3 | PF00874.22 | 0.65 | 53 | 2198.5 | same-strand | PRD domain |
| 4 | PF00459.27 | 1.0 | 81 | -173.0 | same-strand | Inositol monophosphatase family |
| 5 | PF00588.21 | 0.99 | 80 | 364 | opposite-strand | SpoU rRNA Methylase family |
| 6 | PF02082.22 | 0.99 | 80 | 1302 | opposite-strand | Iron-dependent Transcriptional regulator |
| 7 | PF00266.21 | 0.99 | 80 | 1916 | opposite-strand | Aminotransferase class-V |
| 8 | PF01592.18 | 0.89 | 72 | 3171 | opposite-strand | NifU-like N terminal domain |
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