* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07690.18
|
1.0
|
5
|
1308.0
|
same-strand
|
Major Facilitator Superfamily
|
2
|
PF03466.22
|
0.8
|
4
|
374
|
same-strand
|
LysR substrate binding domain
|
3
|
PF00126.29
|
1.0
|
5
|
374.0
|
same-strand
|
Bacterial regulatory helix-turn-helix protein, lysR family
|
4
|
PF03358.17
|
0.8
|
4
|
492
|
same-strand
|
NADPH-dependent FMN reductase
|
5
|
PF00860.22
|
1.0
|
5
|
1112.0
|
opposite-strand
|
Permease family
|
6
|
PF13419.8
|
0.8
|
4
|
2614
|
same-strand
|
Haloacid dehalogenase-like hydrolase
|
7
|
PF00702.28
|
0.8
|
4
|
2614
|
same-strand
|
haloacid dehalogenase-like hydrolase
|
++ More..