* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00593.26
|
1.0
|
3
|
5198.0
|
same-strand
|
TonB dependent receptor
|
2
|
PF07715.17
|
1.0
|
3
|
5198.0
|
same-strand
|
TonB-dependent Receptor Plug Domain
|
3
|
PF00005.29
|
1.0
|
3
|
4350.0
|
same-strand
|
ABC transporter
|
4
|
PF01497.20
|
1.0
|
3
|
3013.5
|
both-strands
|
Periplasmic binding protein
|
5
|
PF01032.20
|
1.0
|
3
|
1481.0
|
same-strand
|
FecCD transport family
|
6
|
PF00202.23
|
1.0
|
3
|
166.0
|
opposite-strand
|
Aminotransferase class-III
|
7
|
PF00654.22
|
1.0
|
3
|
12.0
|
same-strand
|
Voltage gated chloride channel
|
8
|
PF01521.22
|
1.0
|
3
|
1515.0
|
same-strand
|
Iron-sulphur cluster biosynthesis
|
9
|
PF03458.15
|
1.0
|
3
|
1906.0
|
opposite-strand
|
Glycine transporter
|
10
|
PF01048.22
|
1.0
|
3
|
3360.0
|
opposite-strand
|
Phosphorylase superfamily
|
++ More..