* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00037.29
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S binding domain
|
2
|
PF12837.9
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S binding domain
|
3
|
PF12838.9
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S dicluster domain
|
4
|
PF13237.8
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S dicluster domain
|
5
|
PF13247.8
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S dicluster domain
|
6
|
PF13187.8
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S dicluster domain
|
7
|
PF12797.9
|
0.6
|
3
|
3205.5
|
opposite-strand
|
4Fe-4S binding domain
|
8
|
PF10965.10
|
1.0
|
5
|
2545.0
|
opposite-strand
|
Protein of unknown function (DUF2767)
|
9
|
PF00224.23
|
1.0
|
5
|
568.0
|
same-strand
|
Pyruvate kinase, barrel domain
|
10
|
PF02887.18
|
1.0
|
5
|
568.0
|
same-strand
|
Pyruvate kinase, alpha/beta domain
|
11
|
PF04728.15
|
1.0
|
5
|
17.5
|
same-strand
|
Lipoprotein leucine-zipper
|
12
|
PF17969.3
|
1.0
|
5
|
-175.0
|
opposite-strand
|
L,D-transpeptidase C-terminal domain
|
13
|
PF03734.16
|
1.0
|
5
|
-175.0
|
opposite-strand
|
L,D-transpeptidase catalytic domain
|
14
|
PF01476.22
|
1.0
|
5
|
-175.0
|
opposite-strand
|
LysM domain
|
15
|
PF02657.17
|
1.0
|
5
|
978.0
|
opposite-strand
|
Fe-S metabolism associated domain
|
16
|
PF00266.21
|
0.8
|
4
|
1407
|
opposite-strand
|
Aminotransferase class-V
|
17
|
PF01458.19
|
0.8
|
4
|
2624
|
opposite-strand
|
SUF system FeS cluster assembly, SufBD
|
18
|
PF00005.29
|
0.6
|
3
|
3870.0
|
opposite-strand
|
ABC transporter
|
++ More..