Result : B1Y6I5
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0434 protein Lcho_2556 |
| NCBI Accession ID | CP001013.1 |
| Organism | Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) (Leptothrix discophora (strain SP-6)) |
| Left | 2789410 |
| Right | 2789613 |
| Strand | + |
| Nucleotide Sequence | ATGGACACTCGACTGATGGATTTGCTGGTCTGCCCTCTGTGCAAGGGGCCGCTGGCCCACGACCACGCCACGCATGAACTGGTCTGCAAGGCCGACCGGCTGGCGTTTCCGATCCGTGACGGCATCGCCGTGATGCTCGAAAGCCAGGCTCGATCGATCGATCAACCCGCGGCCGAATCGGCACCCGCCGACCTGTCGTCATGA |
| Sequence | MDTRLMDLLVCPLCKGPLAHDHATHELVCKADRLAFPIRDGIAVMLESQARSIDQPAAESAPADLSS |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01066. Profile Description: Trm112p-like protein. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C-terminus contains the strongest conservation. Trm112p is required for tRNA methylation in S. cerevisiae and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices. |
| Pubmed ID | |
| Domain | CDD:412721 |
| Functional Category | Others |
| Uniprot ID | B1Y6I5 |
| ORF Length (Amino Acid) | 67 |
++ More..
| Conservation Analysis |
No. of Species: 269
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2789410 | 2789613 | + | NC_010524.1 | Leptothrix cholodnii SP-6 |
| 2 | 2646102 | 2646299 | + | NC_008825.1 | Methylibium petroleiphilum PM1 |
| 3 | 2431012 | 2431197 | + | NZ_CP053986.1 | Achromobacter denitrificans |
| 4 | 5299410 | 5299589 | - | NZ_LR134302.1 | Achromobacter spanius |
| 5 | 2486572 | 2486754 | - | NZ_CP038034.1 | Achromobacter insolitus |
| 6 | 3173563 | 3173763 | - | NZ_CP024645.1 | Rhizobacter gummiphilus |
| 7 | 2244116 | 2244304 | - | NZ_CP016172.1 | Bordetella flabilis |
| 8 | 3509132 | 3509311 | + | NZ_LT671418.1 | Herminiimonas arsenitoxidans |
| 9 | 2391364 | 2391543 | - | NZ_CP011451.1 | Nitrosomonas communis |
| 10 | 5655699 | 5655875 | + | NZ_CP041185.1 | Janthinobacterium tructae |
| 11 | 2075526 | 2075705 | + | NZ_AP021881.1 | Sulfuriferula nivalis |
| 12 | 1902336 | 1902512 | + | NZ_CP023422.1 | Janthinobacterium svalbardensis |
| 13 | 3615072 | 3615275 | - | NZ_CP017561.1 | Paraburkholderia sprentiae WSM5005 |
| 14 | 3450332 | 3450535 | - | NZ_CP066075.1 | Paraburkholderia ginsengisoli |
| 15 | 3264326 | 3264529 | + | NZ_CP024941.1 | Paraburkholderia terricola |
| 16 | 1946174 | 1946377 | - | NZ_CP022989.1 | Paraburkholderia aromaticivorans |
| 17 | 3605480 | 3605683 | + | NC_010681.1 | Paraburkholderia phytofirmans PsJN |
| 18 | 4037245 | 4037448 | + | NC_007951.1 | Paraburkholderia xenovorans LB400 |
| 19 | 606257 | 606460 | - | NZ_CP026111.1 | Paraburkholderia terrae |
| 20 | 1387419 | 1387622 | + | NZ_CP015958.1 | Paraburkholderia caribensis |
| 21 | 1910161 | 1910358 | - | NZ_LT907988.1 | Orrella dioscoreae |
| 22 | 1735937 | 1736116 | - | NZ_CP016440.1 | Bordetella pseudohinzii |
| 23 | 693613 | 693801 | + | NC_018518.1 | Bordetella pertussis 18323 |
| 24 | 3669114 | 3669299 | - | NZ_CP013119.1 | Alcaligenes faecalis |
| 25 | 2066253 | 2066441 | - | NZ_AP019378.1 | Bordetella parapertussis |
| 26 | 1793000 | 1793188 | - | NZ_LR134326.1 | Bordetella bronchiseptica |
| 27 | 3502925 | 3503104 | - | NZ_CP021395.1 | Bordetella hinzii |
| 28 | 3236857 | 3237060 | + | NZ_CP024934.1 | Paraburkholderia graminis |
| 29 | 1357965 | 1358168 | + | NZ_CP031467.1 | Paraburkholderia caffeinilytica |
| 30 | 608514 | 608717 | - | NC_010622.1 | Paraburkholderia phymatum STM815 |
| 31 | 2249040 | 2249231 | + | NC_010645.1 | Bordetella avium 197N |
| 32 | 1692350 | 1692535 | + | NZ_CP041730.1 | Chitinimonas arctica |
| 33 | 3914496 | 3914687 | + | NZ_CP059560.1 | Aromatoleum petrolei |
| 34 | 2469896 | 2470093 | + | NZ_CP046913.1 | Paraburkholderia acidisoli |
| 35 | 2393765 | 2393986 | + | NZ_CP029640.1 | Paraburkholderia dokdonella |
| 36 | 1773426 | 1773617 | + | NC_016112.1 | Methylotuvimicrobium alcaliphilum 20Z |
| 37 | 2635781 | 2635972 | - | NZ_CP035467.1 | Methylotuvimicrobium buryatense |
| 38 | 2538654 | 2538848 | + | NZ_CP049134.1 | Paraburkholderia tropica |
| 39 | 5810252 | 5810425 | + | NZ_CP019038.1 | Massilia putida |
| 40 | 2234318 | 2234500 | + | NC_008344.1 | Nitrosomonas eutropha C91 |
| 41 | 1006139 | 1006327 | + | NZ_CP011257.1 | Ralstonia mannitolilytica |
| 42 | 1108727 | 1108927 | + | NZ_CP025682.1 | Azoarcus pumilus |
| 43 | 4073281 | 4073475 | - | NZ_CP013236.1 | Collimonas pratensis |
| 44 | 2484509 | 2484712 | + | NZ_CP046909.1 | Paraburkholderia acidiphila |
| 45 | 2016320 | 2016508 | - | NZ_CP011971.1 | Steroidobacter denitrificans |
| 46 | 2867146 | 2867334 | + | NZ_CP016022.1 | Ralstonia insidiosa |
| 47 | 5018087 | 5018293 | + | NZ_CP013480.3 | Pandoraea norimbergensis |
| 48 | 4706554 | 4706760 | + | NZ_CP010310.2 | Pandoraea pulmonicola |
| 49 | 2759751 | 2759945 | + | NZ_CP040709.1 | Inhella inkyongensis |
| 50 | 2592291 | 2592470 | + | NZ_CP043146.1 | Bordetella holmesii |
| 51 | 583719 | 583913 | - | NZ_CP009795.1 | Burkholderia dolosa AU0158 |
| 52 | 2897591 | 2897785 | + | NZ_CP013401.1 | Burkholderia metallica |
| 53 | 596474 | 596668 | + | NZ_CP011503.1 | Burkholderia pyrrocinia |
| 54 | 2998698 | 2998892 | + | NC_007510.1 | Burkholderia lata |
| 55 | 2997844 | 2998038 | + | NZ_CP020737.1 | Paraburkholderia acidophila |
| 56 | 3216141 | 3216335 | + | NZ_CP013414.1 | Burkholderia ubonensis |
| 57 | 2867015 | 2867209 | + | NZ_CP009832.1 | Burkholderia multivorans ATCC BAA-247 |
| 58 | 3512079 | 3512285 | + | NZ_CP002580.1 | Burkholderia plantarii |
| 59 | 829444 | 829650 | + | NZ_CP009555.1 | Burkholderia oklahomensis C6786 |
| 60 | 1631736 | 1631942 | + | NZ_CP035900.1 | Burkholderia glumae |
| 61 | 2904048 | 2904242 | + | NZ_CP013450.1 | Burkholderia cenocepacia |
| 62 | 2971410 | 2971604 | + | NZ_CP045235.1 | Burkholderia cepacia |
| 63 | 3944947 | 3945135 | + | NZ_CP012373.2 | Beggiatoa leptomitoformis |
| 64 | 850951 | 851157 | - | NC_007651.1 | Burkholderia thailandensis E264 |
| 65 | 3043886 | 3044080 | + | NZ_CP013459.1 | Burkholderia stagnalis |
| 66 | 1255588 | 1255794 | - | NZ_CP013481.2 | Pandoraea apista |
| 67 | 1915493 | 1915699 | - | NZ_CP047385.1 | Pandoraea fibrosis |
| 68 | 2829410 | 2829604 | + | NZ_CP013398.1 | Burkholderia seminalis |
| 69 | 1130635 | 1130823 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 70 | 7342143 | 7342313 | - | NZ_CP024608.1 | Massilia violaceinigra |
| 71 | 1228157 | 1228363 | + | NZ_CP009727.1 | Burkholderia mallei |
| 72 | 829988 | 830194 | + | NZ_CP008781.1 | Burkholderia pseudomallei |
| 73 | 1641123 | 1641311 | - | NZ_CP068285.1 | Ralstonia syzygii subsp. celebesensis |
| 74 | 1459209 | 1459394 | + | NC_012560.1 | Azotobacter vinelandii DJ |
| 75 | 6662668 | 6662844 | + | NZ_CP040017.1 | Massilia umbonata |
| 76 | 4105838 | 4106044 | + | NZ_CP011807.3 | Pandoraea faecigallinarum |
| 77 | 4481322 | 4481528 | + | NZ_CP010897.2 | Pandoraea vervacti |
| 78 | 1358608 | 1358793 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 79 | 1823497 | 1823694 | + | NZ_CP017415.1 | Acidihalobacter yilgarnenesis |
| 80 | 1317975 | 1318160 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 81 | 1459678 | 1459857 | + | NZ_AP018725.1 | Sulfuriflexus mobilis |
| 82 | 1186462 | 1186641 | + | NZ_AP022853.1 | Sulfurimicrobium lacus |
| 83 | 3878645 | 3878830 | - | NZ_CP047698.1 | Pseudomonas knackmussii |
| 84 | 2128568 | 2128753 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 85 | 1546603 | 1546785 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 86 | 697920 | 698105 | - | NC_014394.1 | Gallionella capsiferriformans ES-2 |
| 87 | 1918583 | 1918762 | - | NC_022357.1 | Sulfuricella denitrificans skB26 |
| 88 | 1989175 | 1989363 | - | NZ_CP013189.1 | Pseudohongiella spirulinae |
| 89 | 498832 | 499014 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 90 | 4454523 | 4454708 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 91 | 2114748 | 2114933 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 92 | 2488387 | 2488569 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 93 | 2338954 | 2339130 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 94 | 978083 | 978274 | + | NZ_CP072793.1 | Thiothrix unzii |
| 95 | 1992799 | 1992981 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 96 | 4135224 | 4135406 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 97 | 1354036 | 1354221 | - | NC_013959.1 | Sideroxydans lithotrophicus ES-1 |
| 98 | 1795558 | 1795737 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 99 | 2285652 | 2285861 | + | NZ_CP035503.1 | Rhodoferax sediminis |
| 100 | 2236303 | 2236485 | - | NC_007947.1 | Methylobacillus flagellatus KT |
| 101 | 2252294 | 2252473 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 102 | 3304638 | 3304838 | - | NZ_CP013235.1 | Collimonas arenae |
| 103 | 2874080 | 2874265 | - | NZ_LR215729.2 | Pseudomonas marincola |
| 104 | 1686595 | 1686759 | + | NC_007912.1 | Saccharophagus degradans 2-40 |
| 105 | 958172 | 958354 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 106 | 3852649 | 3852843 | + | NZ_CP017940.1 | Phyllobacterium zundukense |
| 107 | 336301 | 336498 | - | NC_020453.1 | Bradyrhizobium oligotrophicum S58 |
| 108 | 1576965 | 1577144 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 109 | 538088 | 538267 | - | NC_013960.1 | Nitrosococcus halophilus Nc 4 |
| 110 | 2700781 | 2700963 | + | NZ_CP060714.1 | Diaphorobacter ruginosibacter |
| 111 | 3145006 | 3145188 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 112 | 320135 | 320314 | + | NZ_CP038033.1 | Nitrosococcus wardiae |
| 113 | 1885257 | 1885442 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 114 | 925899 | 926078 | + | NZ_CP068419.1 | Gluconobacter sphaericus |
| 115 | 956284 | 956463 | + | NZ_CP004373.1 | Gluconobacter oxydans DSM 3504 |
| 116 | 6905891 | 6906088 | - | NZ_CP029426.1 | Bradyrhizobium amphicarpaeae |
| 117 | 1532169 | 1532348 | - | NZ_CP035688.1 | Vibrio metoecus |
| 118 | 2117610 | 2117789 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 119 | 288134 | 288319 | - | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 120 | 1004084 | 1004302 | - | NZ_AP014568.1 | Serpentinomonas raichei |
| 121 | 290353 | 290550 | - | NZ_CP058354.1 | Bradyrhizobium japonicum |
| 122 | 2356981 | 2357178 | + | NZ_CP050066.1 | Bradyrhizobium symbiodeficiens |
| 123 | 2884508 | 2884690 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 124 | 458231 | 458410 | - | NC_014315.1 | Nitrosococcus watsonii C-113 |
| 125 | 3190185 | 3190367 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 126 | 6886686 | 6886883 | - | NZ_CP022219.1 | Bradyrhizobium guangxiense |
| 127 | 1608032 | 1608214 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 128 | 1588817 | 1588999 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 129 | 1571975 | 1572157 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 130 | 777128 | 777310 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 131 | 1865081 | 1865263 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 132 | 1805178 | 1805360 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 133 | 3033273 | 3033452 | + | NC_007484.1 | Nitrosococcus oceani ATCC 19707 |
| 134 | 3265676 | 3265873 | - | NZ_CP044543.1 | Bradyrhizobium betae |
| 135 | 811101 | 811289 | - | NZ_AP018738.1 | Ferriphaselus amnicola |
| 136 | 1617600 | 1617782 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 137 | 2423705 | 2423902 | - | NZ_CP029425.1 | Bradyrhizobium ottawaense |
| 138 | 2501362 | 2501541 | + | NZ_CP014689.1 | Gluconobacter albidus |
| 139 | 258163 | 258360 | - | NZ_CP030051.1 | Bradyrhizobium guangdongense |
| 140 | 3872185 | 3872397 | + | NZ_CP013729.1 | Roseateles depolymerans |
| 141 | 856906 | 857088 | - | NZ_CP017420.1 | Delftia tsuruhatensis |
| 142 | 1359573 | 1359755 | + | NZ_CP065748.1 | Delftia lacustris |
| 143 | 2921670 | 2921852 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 144 | 3415998 | 3416180 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 145 | 1386851 | 1387036 | + | NZ_CP028901.1 | Algicoccus marinus |
| 146 | 3425701 | 3425871 | + | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 147 | 918763 | 918957 | + | NZ_CP011367.1 | Thioalkalivibrio versutus |
| 148 | 263044 | 263241 | - | NZ_CP030050.1 | Bradyrhizobium arachidis |
| 149 | 341711 | 341893 | + | NC_007624.1 | Brucella abortus 2308 |
| 150 | 417450 | 417632 | + | NC_022906.1 | Brucella ceti TE10759-12 |
| 151 | 876976 | 877158 | - | NC_009504.1 | Brucella ovis ATCC 25840 |
| 152 | 422887 | 423069 | + | NC_003318.1 | Brucella melitensis bv. 1 str. 16M |
| 153 | 874596 | 874778 | - | NC_010104.1 | Brucella canis ATCC 23365 |
| 154 | 875295 | 875477 | - | NC_004311.2 | Brucella suis 1330 |
| 155 | 142813 | 142995 | + | NZ_LT605586.1 | Brucella inopinata |
| 156 | 1681166 | 1681348 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 157 | 1556528 | 1556710 | + | NC_015968.1 | Enterobacter soli |
| 158 | 29554 | 29736 | - | NZ_CP018787.1 | Oxalobacter formigenes |
| 159 | 578668 | 578865 | + | NZ_CP032617.1 | Bradyrhizobium diazoefficiens |
| 160 | 1962681 | 1962866 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 161 | 681346 | 681537 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 162 | 4828790 | 4828978 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 163 | 826828 | 827007 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 164 | 2597383 | 2597565 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 165 | 3411453 | 3411641 | + | NZ_CP004387.1 | Alcanivorax pacificus W11-5 |
| 166 | 1546011 | 1546193 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 167 | 4822159 | 4822371 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 168 | 433811 | 434008 | - | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 169 | 232824 | 233015 | - | NZ_LS398110.1 | Bradyrhizobium vignae |
| 170 | 1356459 | 1356641 | - | NZ_CP032485.1 | Neokomagataea tanensis |
| 171 | 4024974 | 4025156 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 172 | 807890 | 808087 | - | NC_011313.1 | Aliivibrio salmonicida LFI1238 |
| 173 | 4158252 | 4158419 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 174 | 719432 | 719608 | - | NZ_CP048635.1 | Rhizobium oryzihabitans |
| 175 | 1132212 | 1132421 | + | NC_014532.2 | Halomonas elongata DSM 2581 |
| 176 | 8342859 | 8343056 | + | NZ_CP042968.1 | Bradyrhizobium paxllaeri |
| 177 | 1847857 | 1848039 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 178 | 772333 | 772509 | - | NZ_CP061004.1 | Agrobacterium tumefaciens |
| 179 | 350236 | 350445 | + | NZ_CP041636.1 | Ferrovibrio terrae |
| 180 | 293407 | 293604 | - | NZ_CP030053.1 | Bradyrhizobium guangzhouense |
| 181 | 2822827 | 2823027 | + | NZ_CP037867.1 | Hydrogenophaga pseudoflava |
| 182 | 3082 | 3267 | - | NZ_CP022374.1 | Acetobacter oryzifermentans |
| 183 | 243393 | 243590 | - | NC_017082.1 | Bradyrhizobium cosmicum |
| 184 | 1563559 | 1563744 | - | NC_021991.1 | Acetobacter pasteurianus 386B |
| 185 | 3582810 | 3582998 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 186 | 1454212 | 1454394 | + | NZ_CP015581.1 | Tatumella citrea |
| 187 | 713623 | 713799 | - | NZ_CP053857.1 | Rhizobium pusense |
| 188 | 3316343 | 3316528 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 189 | 2890219 | 2890407 | + | NZ_CP054021.1 | Rhizobium indicum |
| 190 | 1591876 | 1592070 | + | NZ_LN606600.1 | Acetobacter senegalensis |
| 191 | 46919 | 47104 | - | NZ_CP042808.1 | Acetobacter oryzoeni |
| 192 | 3589576 | 3589764 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 193 | 3483574 | 3483759 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 194 | 4336982 | 4337170 | - | NZ_CP071604.1 | Rhizobium binae |
| 195 | 4346892 | 4347080 | - | NZ_CP013532.1 | Rhizobium phaseoli |
| 196 | 2317904 | 2318110 | + | NC_015677.1 | Ramlibacter tataouinensis TTB310 |
| 197 | 2466931 | 2467113 | - | NZ_LR134531.1 | Pragia fontium |
| 198 | 3338456 | 3338641 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 199 | 4570998 | 4571174 | + | NZ_CP007142.1 | Gynuella sunshinyii YC6258 |
| 200 | 4124420 | 4124608 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 201 | 2159750 | 2159932 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 202 | 8289501 | 8289698 | + | NZ_CP016428.1 | Bradyrhizobium icense |
| 203 | 3583443 | 3583631 | - | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 204 | 3123662 | 3123850 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 205 | 3095354 | 3095542 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 206 | 2492773 | 2492958 | - | NZ_CP015164.1 | Acetobacter ascendens |
| 207 | 3471332 | 3471520 | + | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 208 | 2629241 | 2629426 | + | NC_015186.1 | Acidiphilium multivorum AIU301 |
| 209 | 185195 | 185389 | + | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 210 | 3948198 | 3948386 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 211 | 3457959 | 3458153 | + | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 212 | 1816919 | 1817122 | + | NZ_CP015839.1 | Marinobacterium aestuarii |
| 213 | 1114627 | 1114803 | + | NC_008576.1 | Magnetococcus marinus MC-1 |
| 214 | 985231 | 985419 | - | NC_018691.1 | Alcanivorax dieselolei B5 |
| 215 | 1273900 | 1274064 | + | NZ_CP020038.1 | Agarilytica rhodophyticola |
| 216 | 4585412 | 4585612 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 217 | 1888917 | 1889111 | + | NZ_CP036404.1 | Komagataeibacter saccharivorans |
| 218 | 330215 | 330409 | + | NZ_CP064062.1 | Brucella anthropi |
| 219 | 4120066 | 4120254 | - | NZ_CP020906.1 | Rhizobium etli |
| 220 | 183064 | 183252 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 221 | 4294098 | 4294286 | - | NZ_CP013500.1 | Rhizobium esperanzae |
| 222 | 1635010 | 1635198 | - | NZ_CP071454.1 | Rhizobium lentis |
| 223 | 3949074 | 3949262 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 224 | 1857606 | 1857788 | + | NZ_LT906479.1 | Serratia ficaria |
| 225 | 426574 | 426756 | + | NZ_CP067057.1 | Rahnella aceris |
| 226 | 2252494 | 2252670 | + | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 227 | 2300901 | 2301095 | - | NZ_CP019875.1 | Komagataeibacter nataicola |
| 228 | 2336239 | 2336448 | + | NZ_CP025611.1 | Niveispirillum cyanobacteriorum |
| 229 | 759747 | 759941 | + | NC_019902.2 | Thioalkalivibrio nitratireducens DSM 14787 |
| 230 | 850268 | 850450 | + | NZ_CP015421.1 | Rhodovulum sulfidophilum |
| 231 | 4190913 | 4191101 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 232 | 1120422 | 1120604 | - | NZ_CP009787.1 | Yersinia rohdei |
| 233 | 1013549 | 1013731 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 234 | 1824870 | 1825052 | + | NZ_CP043727.1 | Yersinia canariae |
| 235 | 1798554 | 1798736 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 236 | 1301574 | 1301756 | + | NZ_CP032487.1 | Yersinia hibernica |
| 237 | 2777597 | 2777797 | + | NZ_CP011797.1 | Reinekea forsetii |
| 238 | 4028641 | 4028823 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 239 | 3503777 | 3503965 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 240 | 3355052 | 3355255 | + | NZ_CP054836.1 | Oricola thermophila |
| 241 | 773924 | 774106 | + | NZ_CP038018.1 | Eikenella exigua |
| 242 | 1832433 | 1832615 | + | NZ_LT906482.1 | Eikenella corrodens |
| 243 | 649886 | 650074 | + | NZ_AP014946.1 | Variibacter gotjawalensis |
| 244 | 1695771 | 1695965 | + | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 245 | 2840408 | 2840590 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 246 | 3412036 | 3412218 | + | NZ_CP007230.1 | Yersinia similis |
| 247 | 1158981 | 1159154 | - | NZ_CP060244.1 | Entomobacter blattae |
| 248 | 1447170 | 1447340 | - | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 249 | 3485470 | 3485658 | + | NZ_CP015880.1 | Ensifer adhaerens |
| 250 | 4001874 | 4002068 | + | NZ_CP044117.1 | Roseomonas mucosa |
| 251 | 3519719 | 3519910 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 252 | 1230700 | 1230888 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 253 | 876406 | 876588 | - | NC_013118.1 | Brucella microti CCM 4915 |
| 254 | 663248 | 663454 | - | NZ_CP014525.1 | Haematospirillum jordaniae |
| 255 | 2604662 | 2604856 | - | NZ_CP007029.1 | Thioalkalivibrio paradoxus ARh 1 |
| 256 | 3496902 | 3497090 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 257 | 47840 | 48016 | + | NC_013532.1 | Anaplasma centrale str. Israel |
| 258 | 2272103 | 2272291 | - | NZ_CP031416.1 | Gallaecimonas mangrovi |
| 259 | 3484377 | 3484565 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 260 | 4675644 | 4675832 | + | NC_020911.1 | Octadecabacter antarcticus 307 |
| 261 | 2586537 | 2586731 | - | NZ_CP018632.1 | Granulosicoccus antarcticus IMCC3135 |
| 262 | 993784 | 993972 | - | NZ_CP038017.1 | Allofrancisella frigidaquae |
| 263 | 3829420 | 3829608 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 264 | 1226173 | 1226349 | + | NZ_CP029347.1 | Saliniradius amylolyticus |
| 265 | 1062915 | 1063103 | - | NZ_CP038241.1 | Allofrancisella inopinata |
| 266 | 1883986 | 1884177 | + | NZ_CP012023.1 | Celeribacter marinus |
| 267 | 98989 | 99177 | + | NZ_CP065915.1 | Pelagovum pacificum |
| 268 | 968791 | 968979 | + | NZ_CP010427.1 | Allofrancisella guangzhouensis |
| 269 | 3345634 | 3345798 | + | NZ_CP024899.1 | Rhodobaca barguzinensis |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010524.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02606.16 | 0.61 | 165 | 12 | same-strand | Tetraacyldisaccharide-1-P 4'-kinase |
| 2 | PF02348.21 | 0.61 | 164 | 0.5 | same-strand | Cytidylyltransferase |
++ More..