* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00691.22
|
1.0
|
3
|
4175
|
same-strand
|
OmpA family
|
2
|
PF16331.7
|
1.0
|
3
|
3374
|
same-strand
|
TolA binding protein trimerisation
|
3
|
PF13174.8
|
1.0
|
3
|
3374
|
same-strand
|
Tetratricopeptide repeat
|
4
|
PF13432.8
|
1.0
|
3
|
3374
|
same-strand
|
Tetratricopeptide repeat
|
5
|
PF02445.18
|
1.0
|
3
|
1482
|
same-strand
|
Quinolinate synthetase A protein
|
6
|
PF04973.14
|
1.0
|
3
|
725
|
same-strand
|
Nicotinamide mononucleotide transporter
|
7
|
PF01545.23
|
1.0
|
3
|
-122
|
opposite-strand
|
Cation efflux family
|
8
|
PF13985.8
|
1.0
|
3
|
205
|
opposite-strand
|
YbgS-like protein
|
9
|
PF00793.22
|
1.0
|
3
|
901
|
same-strand
|
DAHP synthetase I family
|
10
|
PF00300.24
|
0.67
|
2
|
2115.5
|
opposite-strand
|
Histidine phosphatase superfamily (branch 1)
|
11
|
PF01263.22
|
0.67
|
2
|
3070.0
|
opposite-strand
|
Aldose 1-epimerase
|
12
|
PF07676.14
|
0.67
|
2
|
4696.0
|
same-strand
|
WD40-like Beta Propeller Repeat
|
13
|
PF04052.15
|
0.67
|
2
|
4696.0
|
same-strand
|
TolB amino-terminal domain
|
++ More..