* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00005.29
|
1.0
|
4
|
2920
|
opposite-strand
|
ABC transporter
|
2
|
PF02463.21
|
1.0
|
4
|
2920
|
opposite-strand
|
RecF/RecN/SMC N terminal domain
|
3
|
PF01156.21
|
1.0
|
4
|
1867
|
opposite-strand
|
Inosine-uridine preferring nucleoside hydrolase
|
4
|
PF06889.13
|
1.0
|
4
|
1303.0
|
same-strand
|
Protein of unknown function (DUF1266)
|
5
|
PF08238.14
|
1.0
|
4
|
2112
|
opposite-strand
|
Sel1 repeat
|
6
|
PF00528.24
|
0.75
|
3
|
3696
|
opposite-strand
|
Binding-protein-dependent transport system inner membrane component
|
++ More..