Result : EXP00674
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00674 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 2448915 |
| Right | 2449088 |
| Strand | + |
| Nucleotide Sequence | GTGAGCAAGCCACCGATTTCTGGATGGCGATCGTACACCGTCACCCCCACGCCATTGCGGGTCAGAACATCCGCACAGGCCAGCCCTGCCGGACCTGCACCGATAATCGCCACCCGCTTGTCCACTTTGGTGACATGGCTTAAGTCAGGACGCCAACCTTTCGCCAACGCCTGA |
| Sequence | VSKPPISGWRSYTVTPTPLRVRTSAQASPAGPAPIIATRLSTLVTWLKSGRQPFANA |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 57 |
++ More..
| Conservation Analysis |
No. of Species: 56
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2584426 | 2584599 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 2 | 3300685 | 3300858 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 1165038 | 1165211 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 4 | 3119094 | 3119267 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 2551413 | 2551586 | + | NZ_AP014857.1 | Escherichia albertii |
| 6 | 4779485 | 4779691 | - | NZ_CP038469.1 | Citrobacter tructae |
| 7 | 2539471 | 2539665 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 3571339 | 3571545 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 5382531 | 5382725 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 10 | 4496680 | 4496853 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 11 | 1336826 | 1337020 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 12 | 636839 | 637033 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 13 | 3474198 | 3474371 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 14 | 1134175 | 1134381 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 15 | 1065072 | 1065257 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 16 | 358700 | 358894 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 17 | 4222008 | 4222202 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 18 | 1284769 | 1284942 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 19 | 4193899 | 4194105 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 20 | 1608939 | 1609133 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 21 | 508552 | 508746 | + | NZ_CP050508.1 | Raoultella terrigena |
| 22 | 3499371 | 3499577 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 23 | 1359442 | 1359627 | - | NZ_CP053416.1 | Salmonella bongori |
| 24 | 3396028 | 3396210 | + | NC_015968.1 | Enterobacter soli |
| 25 | 4844923 | 4845108 | + | NZ_CP026047.1 | Raoultella planticola |
| 26 | 540311 | 540505 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 27 | 2424658 | 2424843 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 28 | 498346 | 498552 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 29 | 407932 | 408138 | + | NZ_LT615367.1 | Dickeya aquatica |
| 30 | 4708968 | 4709174 | + | NZ_CP025799.1 | Dickeya zeae |
| 31 | 3824557 | 3824751 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 32 | 2349389 | 2349595 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 33 | 2138784 | 2138990 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 34 | 4876044 | 4876238 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 35 | 2803336 | 2803530 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 36 | 512068 | 512274 | + | NZ_CP054254.1 | Klebsiella variicola |
| 37 | 1775025 | 1775231 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 38 | 4781461 | 4781667 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 39 | 442056 | 442217 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 40 | 877309 | 877503 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 41 | 436985 | 437179 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 42 | 1320203 | 1320409 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 43 | 3601904 | 3602065 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 44 | 426873 | 427067 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 45 | 3724634 | 3724828 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 46 | 3184050 | 3184256 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 47 | 2301043 | 2301228 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 48 | 4765542 | 4765736 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 49 | 4887382 | 4887576 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 50 | 1969265 | 1969459 | - | NZ_LS483470.1 | Leminorella richardii |
| 51 | 1618662 | 1618847 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 52 | 4300073 | 4300279 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 53 | 4974053 | 4974238 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 54 | 4529892 | 4530077 | - | NZ_CP028271.1 | Mixta intestinalis |
| 55 | 4934857 | 4935042 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 56 | 2170648 | 2170830 | + | NZ_CP013187.1 | Pseudoalteromonas phenolica |
| 57 | 3031095 | 3031301 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 58 | 2515294 | 2515491 | - | NZ_CP033040.1 | Thiomicrorhabdus indica |
| 59 | 1038999 | 1039157 | - | NZ_CP040752.1 | Streptomyces rectiverticillatus |
| 60 | 8004629 | 8004802 | + | NZ_CP042997.1 | Aquisphaera giovannonii |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF14691.8 | 0.96 | 54 | -194.0 | opposite-strand | Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster |
| 2 | PF07992.16 | 0.96 | 54 | -194 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
| 3 | PF00070.29 | 0.77 | 43 | -194 | opposite-strand | Pyridine nucleotide-disulphide oxidoreductase |
++ More..