* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF08239.13
|
1.0
|
4
|
3172
|
same-strand
|
Bacterial SH3 domain
|
2
|
PF01743.22
|
1.0
|
4
|
1870
|
same-strand
|
Poly A polymerase head domain
|
3
|
PF12627.9
|
1.0
|
4
|
1870
|
same-strand
|
Probable RNA and SrmB- binding site of polymerase A
|
4
|
PF01966.24
|
1.0
|
4
|
1870
|
same-strand
|
HD domain
|
5
|
PF02673.20
|
1.0
|
4
|
886
|
opposite-strand
|
Bacitracin resistance protein BacA
|
6
|
PF02152.20
|
1.0
|
4
|
427
|
opposite-strand
|
Dihydroneopterin aldolase
|
7
|
PF02660.17
|
1.0
|
4
|
-53
|
same-strand
|
Glycerol-3-phosphate acyltransferase
|
8
|
PF03466.22
|
0.75
|
3
|
255.0
|
opposite-strand
|
LysR substrate binding domain
|
9
|
PF00814.27
|
0.75
|
3
|
4426.0
|
opposite-strand
|
tRNA N6-adenosine threonylcarbamoyltransferase
|
++ More..