Result : EXP00644
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00644 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 239573 |
| Right | 239725 |
| Strand | + |
| Nucleotide Sequence | CAACAGCAACAAGGTGAAGCAACAATTCAGCGCATTGTACGTCAGGCAAGTAAGTTACGCGTTGTTTTTGCGACAGATGACGAGCTTGCAGCACATGAAGCCCGTCTTGATCTGGTGCAGAAGAAGGGCGGAAGCTGCCTCTGGCGGGCATAA |
| Sequence | QQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQKKGGSCLWRA |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 50 |
++ More..
| Conservation Analysis |
No. of Species: 123
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 229533 | 229700 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 3792051 | 3792218 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 859620 | 859787 | + | NZ_LR134340.1 | Escherichia marmotae |
| 4 | 236631 | 236798 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 5 | 240182 | 240349 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 6 | 3376351 | 3376518 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 7 | 238020 | 238187 | + | NZ_AP014857.1 | Escherichia albertii |
| 8 | 2749472 | 2749639 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 9 | 303967 | 304134 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 10 | 2889067 | 2889234 | + | NZ_CP053416.1 | Salmonella bongori |
| 11 | 2029899 | 2030066 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 12 | 265783 | 265950 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 13 | 2435410 | 2435574 | - | NZ_CP038469.1 | Citrobacter tructae |
| 14 | 1362935 | 1363111 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 15 | 4660362 | 4660526 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 16 | 3694851 | 3695015 | + | NZ_CP033744.1 | Citrobacter freundii |
| 17 | 953349 | 953516 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 18 | 3431844 | 3432011 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 19 | 4478008 | 4478142 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 20 | 724775 | 724909 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 21 | 4362762 | 4362896 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 22 | 892421 | 892588 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 23 | 1622592 | 1622759 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 24 | 1038871 | 1039050 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 25 | 3746807 | 3746974 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 26 | 2155443 | 2155577 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 27 | 2757201 | 2757335 | + | NZ_CP026047.1 | Raoultella planticola |
| 28 | 4276259 | 4276393 | - | NZ_CP041247.1 | Raoultella electrica |
| 29 | 923040 | 923207 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 30 | 2461604 | 2461768 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 31 | 909807 | 909974 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 32 | 924522 | 924689 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 33 | 3111189 | 3111356 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 34 | 2506417 | 2506584 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 35 | 12993 | 13160 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 36 | 3247214 | 3247381 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 37 | 4929626 | 4929760 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 38 | 3878652 | 3878831 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 39 | 4162090 | 4162257 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 40 | 4816087 | 4816221 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 41 | 2630590 | 2630757 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 42 | 879370 | 879537 | + | NC_015968.1 | Enterobacter soli |
| 43 | 4476478 | 4476612 | - | NZ_CP054254.1 | Klebsiella variicola |
| 44 | 4203157 | 4203291 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 45 | 1016435 | 1016569 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 46 | 878210 | 878377 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 47 | 2131495 | 2131662 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 48 | 941673 | 941840 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 49 | 4591544 | 4591678 | - | NZ_CP050508.1 | Raoultella terrigena |
| 50 | 922741 | 922908 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 51 | 3692901 | 3693068 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 52 | 3707956 | 3708123 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 53 | 2591690 | 2591836 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 54 | 4314697 | 4314873 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 55 | 2240805 | 2240972 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 56 | 930583 | 930744 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 57 | 1750039 | 1750206 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 58 | 931555 | 931737 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 59 | 2933641 | 2933811 | - | NZ_CP065534.1 | Lonsdalea populi |
| 60 | 3612153 | 3612320 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 61 | 3764619 | 3764798 | + | NZ_CP049115.1 | Pantoea stewartii |
| 62 | 4128204 | 4128383 | - | NZ_CP071320.1 | Serratia ureilytica |
| 63 | 3483143 | 3483286 | - | NZ_CP025799.1 | Dickeya zeae |
| 64 | 1161951 | 1162124 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 65 | 897220 | 897399 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 66 | 2935180 | 2935362 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 67 | 224967 | 225146 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 68 | 4049148 | 4049318 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 69 | 935829 | 936005 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 70 | 934340 | 934516 | + | NZ_LR134494.1 | Serratia quinivorans |
| 71 | 3721136 | 3721306 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 72 | 869341 | 869517 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 73 | 558963 | 559136 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 74 | 2908329 | 2908502 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 75 | 2418793 | 2418936 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 76 | 656842 | 657024 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 77 | 1326010 | 1326183 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 78 | 3671916 | 3672089 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 79 | 3666519 | 3666692 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 80 | 951345 | 951488 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 81 | 2488202 | 2488375 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 82 | 1013728 | 1013907 | + | NZ_LT906479.1 | Serratia ficaria |
| 83 | 1208972 | 1209145 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 84 | 5024030 | 5024200 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 85 | 3017646 | 3017828 | + | NZ_CP011254.1 | Serratia fonticola |
| 86 | 3312231 | 3312371 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 87 | 1168090 | 1168233 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 88 | 965721 | 965864 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 89 | 2465822 | 2465956 | + | NZ_CP065640.1 | Serratia rubidaea |
| 90 | 2830904 | 2831077 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 91 | 991575 | 991721 | + | NZ_LT615367.1 | Dickeya aquatica |
| 92 | 3652991 | 3653164 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 93 | 4638698 | 4638832 | + | NZ_CP067057.1 | Rahnella aceris |
| 94 | 335071 | 335244 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 95 | 3031657 | 3031812 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 96 | 974862 | 975026 | + | NZ_CP061511.1 | Mixta calida |
| 97 | 1081296 | 1081460 | + | NZ_CP026377.1 | Mixta gaviniae |
| 98 | 1020555 | 1020722 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 99 | 201132 | 201296 | + | NZ_CP028271.1 | Mixta intestinalis |
| 100 | 3614786 | 3614941 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 101 | 225680 | 225817 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 102 | 1730826 | 1730963 | + | NZ_CP046670.1 | Alteromonas mediterranea |
| 103 | 2266839 | 2266973 | - | NC_015554.1 | Alteromonas naphthalenivorans |
| 104 | 1635702 | 1635842 | - | NZ_CP014322.1 | Alteromonas addita |
| 105 | 2159541 | 2159681 | - | NZ_CP040449.1 | Aeromonas simiae |
| 106 | 2933419 | 2933586 | + | NZ_CP021377.1 | Oceanisphaera profunda |
| 107 | 996698 | 996826 | + | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 108 | 2537432 | 2537608 | - | NZ_CP011025.1 | Pseudoalteromonas arctica A 37-1-2 |
| 109 | 1288036 | 1288158 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 110 | 2067731 | 2067907 | - | NC_007481.1 | Pseudoalteromonas translucida |
| 111 | 2376675 | 2376851 | - | NZ_CP011036.1 | Pseudoalteromonas nigrifaciens |
| 112 | 67659 | 67832 | - | NZ_CP072425.1 | Pseudoalteromonas viridis |
| 113 | 2517899 | 2518063 | - | NZ_CP044069.1 | Vibrio vulnificus |
| 114 | 2385382 | 2385522 | - | NZ_CP045350.1 | Vibrio aquimaris |
| 115 | 693810 | 693950 | + | NZ_AP019651.1 | Vibrio taketomensis |
| 116 | 2104027 | 2104167 | - | NZ_CP022741.1 | Vibrio qinghaiensis |
| 117 | 2185343 | 2185510 | + | NZ_CP020472.1 | Shewanella japonica |
| 118 | 2279899 | 2280039 | - | NZ_CP016414.1 | Vibrio scophthalmi |
| 119 | 2270330 | 2270467 | - | NZ_CP032090.1 | Pseudoalteromonas donghaensis |
| 120 | 2412871 | 2413032 | + | NC_016901.1 | Shewanella baltica OS678 |
| 121 | 2296021 | 2296182 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 122 | 2218693 | 2218854 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 123 | 1930216 | 1930344 | - | NZ_AP018685.1 | Vibrio rumoiensis |
| 124 | 1322744 | 1322869 | + | NZ_AP014936.1 | Sulfurifustis variabilis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01464.22 | 0.97 | 119 | 2799 | opposite-strand | Transglycosylase SLT domain |
| 2 | PF01476.22 | 0.97 | 119 | 2799.5 | opposite-strand | LysM domain |
| 3 | PF00753.29 | 0.94 | 116 | 1858.0 | opposite-strand | Metallo-beta-lactamase superfamily |
| 4 | PF16123.7 | 0.97 | 119 | 1858.5 | opposite-strand | Hydroxyacylglutathione hydrolase C-terminus |
| 5 | PF00075.26 | 1.0 | 123 | 629.0 | opposite-strand | RNase H |
++ More..