Result : EXP00614

Protein Information

• Protein name: EXP00614
• NCBI Accession ID: CP001509.3
• Organism: Escherichia coli BL21(DE3)
• Left: 373725
• Right: 373808
• Strand: +
• Nucleotide Sequence: ATCGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGA
• Sequence: IGNDSNLLIVFYVQIMPDDFVMQLHRF
• Source of smORF: Ribo-seq
• Pubmed ID: 30904393
• Functional Category: Function not yet assigned
• ORF Length (Amino Acid): 27

Conservation Analysis

No. of Species: 10

Sr.No.	Left Position	Right Position	Strand	NCBI Accession id	Species Name
1	2031008	2031091	+	NZ_CP061527.1	Shigella dysenteriae
2	2528099	2528182	+	NZ_CP061527.1	Shigella dysenteriae
3	3528886	3528969	+	NZ_CP061527.1	Shigella dysenteriae
4	1399667	1399759	+	NZ_CP061527.1	Shigella dysenteriae
5	1243476	1243562	-	NZ_CP061527.1	Shigella dysenteriae
6	1993165	1993248	+	NZ_CP061527.1	Shigella dysenteriae
7	3234959	3235045	+	NZ_CP061527.1	Shigella dysenteriae
8	1946723	1946812	-	NZ_CP061527.1	Shigella dysenteriae
9	2667376	2667471	+	NZ_CP061527.1	Shigella dysenteriae
10	3888837	3888923	+	NZ_CP061527.1	Shigella dysenteriae
11	3584145	3584240	+	NZ_CP061527.1	Shigella dysenteriae
12	3760673	3760771	-	NZ_CP061527.1	Shigella dysenteriae
13	286963	287052	+	NZ_CP061527.1	Shigella dysenteriae
14	560756	560839	-	NZ_CP061527.1	Shigella dysenteriae
15	223105	223191	+	NZ_CP061527.1	Shigella dysenteriae
16	846589	846672	-	NZ_CP061527.1	Shigella dysenteriae
17	3375845	3375928	-	NZ_CP061527.1	Shigella dysenteriae
18	3463205	3463297	-	NZ_CP061527.1	Shigella dysenteriae
19	3111608	3111703	-	NZ_CP061527.1	Shigella dysenteriae
20	4010278	4010370	+	NZ_CP061527.1	Shigella dysenteriae
21	4038090	4038179	+	NZ_CP061527.1	Shigella dysenteriae
22	4118277	4118363	+	NZ_CP061527.1	Shigella dysenteriae
23	265639	265728	-	NZ_CP061527.1	Shigella dysenteriae
24	550691	550786	+	NZ_CP061527.1	Shigella dysenteriae
25	3063598	3063681	-	NZ_CP061527.1	Shigella dysenteriae
26	2077242	2077325	+	NZ_CP061527.1	Shigella dysenteriae
27	1693680	1693763	-	NZ_CP061527.1	Shigella dysenteriae
28	3954532	3954627	+	NZ_CP061527.1	Shigella dysenteriae
29	3794312	3794407	-	NZ_CP061527.1	Shigella dysenteriae
30	2942132	2942221	-	NZ_CP061527.1	Shigella dysenteriae
31	4065104	4065181	+	NZ_CP061527.1	Shigella dysenteriae
32	2287443	2287526	+	NC_004337.2	Shigella flexneri 2a str. 301
33	3693795	3693890	-	NC_004337.2	Shigella flexneri 2a str. 301
34	3182268	3182354	-	NC_004337.2	Shigella flexneri 2a str. 301
35	1766523	1766609	+	NC_004337.2	Shigella flexneri 2a str. 301
36	1736661	1736753	-	NC_004337.2	Shigella flexneri 2a str. 301
37	1410568	1410651	-	NC_004337.2	Shigella flexneri 2a str. 301
38	2756772	2756855	-	NC_004337.2	Shigella flexneri 2a str. 301
39	1856674	1856763	-	NC_004337.2	Shigella flexneri 2a str. 301
40	4478671	4478754	-	NC_004337.2	Shigella flexneri 2a str. 301
41	3362655	3362738	-	NC_004337.2	Shigella flexneri 2a str. 301
42	379326	379409	-	NC_004337.2	Shigella flexneri 2a str. 301
43	1769719	1769802	-	NC_004337.2	Shigella flexneri 2a str. 301
44	3728508	3728591	-	NC_004337.2	Shigella flexneri 2a str. 301
45	1533614	1533697	+	NC_004337.2	Shigella flexneri 2a str. 301
46	1366141	1366224	-	NC_004337.2	Shigella flexneri 2a str. 301
47	521442	521525	-	NC_004337.2	Shigella flexneri 2a str. 301
48	4570410	4570502	-	NC_004337.2	Shigella flexneri 2a str. 301
49	1295068	1295154	+	NC_004337.2	Shigella flexneri 2a str. 301
50	87628	87714	-	NC_004337.2	Shigella flexneri 2a str. 301
51	83951	84037	+	NZ_CP061511.1	Mixta calida
52	551013	551105	-	NZ_CP061511.1	Mixta calida
53	2809613	2809705	+	NZ_CP061511.1	Mixta calida
54	2917745	2917828	-	NZ_CP061511.1	Mixta calida
55	3095214	3095303	+	NZ_CP061511.1	Mixta calida
56	2100051	2100134	+	NZ_CP045205.1	Citrobacter telavivensis
57	2827529	2827612	+	NZ_CP045205.1	Citrobacter telavivensis
58	2407119	2407214	-	NZ_CP045205.1	Citrobacter telavivensis
59	149844	149930	+	NZ_CP011600.1	Phytobacter ursingii
60	257899	257988	+	NC_000913.3	Escherichia coli str. K-12 substr. MG1655
61	1978500	1978583	+	NC_000913.3	Escherichia coli str. K-12 substr. MG1655
62	4519159	4519245	-	NC_000913.3	Escherichia coli str. K-12 substr. MG1655
63	2711214	2711306	-	NZ_CP011602.1	Phytobacter ursingii
64	3156911	3157006	+	NZ_CP043318.1	Enterobacter chengduensis
65	161816	161902	-	NZ_CP061512.1	Mixta calida
66	50511	50597	-	NZ_CP036176.1	Klebsiella huaxiensis
67	178268	178363	+	NC_004851.1	Shigella flexneri 2a str. 301
68	832889	832972	+	NZ_CP016176.1	Xenorhabdus hominickii
69	2771859	2771951	-	NZ_CP016176.1	Xenorhabdus hominickii
70	1743468	1743551	+	NC_013892.1	Xenorhabdus bovienii SS-2004

Neighborhood Conservation Analysis

^* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
^* 'Small ORF' represents the entry/query analyzed.
^* Image generated using 'gggenes'(R-Package).

Neighborhood Representative Chosen(Species): NZ_CP061527.1

Sr.No.	Domain	Co-occurrence Frequency	No. of species in which domain occurs with smORF	Median distance b/w smORF and domain bearing ORFs	Orientation relative to smORF	PFAM Information
1	PF03811.15	0.6	6	1237.0	opposite-strand	InsA N-terminal domain
2	PF03400.15	0.8	8	-65.0	opposite-strand	IS1 transposase