Result : EXP00611
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00611 |
| NCBI Accession ID | CP001509.3 |
| Organism | Escherichia coli BL21(DE3) |
| Left | 226276 |
| Right | 226344 |
| Strand | + |
| Nucleotide Sequence | ATGCATTTTTCCACTTGTCTTCCTGAGACGACTCCCTATAATGCGCCTCCATCGACACGGCGGATGTGA |
| Sequence | MHFSTCLPETTPYNAPPSTRRM |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 22 |
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| Conservation Analysis |
No. of Species: 55
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2931777 | 2931845 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 2 | 3778632 | 3778700 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 3 | 846199 | 846267 | + | NZ_LR134340.1 | Escherichia marmotae |
| 4 | 246784 | 246852 | + | NZ_LR134340.1 | Escherichia marmotae |
| 5 | 3389840 | 3389908 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 6 | 3680298 | 3680366 | + | NZ_CP033744.1 | Citrobacter freundii |
| 7 | 1377725 | 1377793 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 8 | 2450052 | 2450120 | - | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 2876087 | 2876155 | + | NZ_CP053416.1 | Salmonella bongori |
| 10 | 225172 | 225240 | + | NZ_AP014857.1 | Escherichia albertii |
| 11 | 226766 | 226834 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 12 | 288847 | 288915 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 13 | 223435 | 223503 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 14 | 214332 | 214400 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 15 | 1637349 | 1637417 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 877838 | 877906 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 17 | 395397 | 395465 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 18 | 863635 | 863703 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 19 | 387124 | 387192 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 20 | 3418297 | 3418365 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 21 | 895218 | 895286 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 22 | 370198 | 370266 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 23 | 2645343 | 2645411 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 24 | 2148987 | 2149055 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 25 | 3413724 | 3413792 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 26 | 1024226 | 1024294 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 27 | 2170522 | 2170590 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 28 | 2876691 | 2876759 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 29 | 938673 | 938741 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 30 | 4019034 | 4019102 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 31 | 1975 | 2043 | + | NZ_CP017280.1 | Enterobacter ludwigii |
| 32 | 3707686 | 3707754 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 33 | 5606097 | 5606165 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 34 | 374077 | 374142 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 35 | 908271 | 908339 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 36 | 4831011 | 4831079 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 37 | 3663818 | 3663883 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 38 | 3125858 | 3125920 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 39 | 2378406 | 2378474 | + | NZ_CP026047.1 | Raoultella planticola |
| 40 | 4616547 | 4616615 | - | NZ_CP041247.1 | Raoultella electrica |
| 41 | 864772 | 864840 | + | NC_015968.1 | Enterobacter soli |
| 42 | 4606483 | 4606551 | - | NZ_CP050508.1 | Raoultella terrigena |
| 43 | 4962529 | 4962597 | - | NZ_CP050508.1 | Raoultella terrigena |
| 44 | 4491279 | 4491347 | - | NZ_CP054254.1 | Klebsiella variicola |
| 45 | 4217946 | 4218014 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 46 | 4398549 | 4398614 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 47 | 258344 | 258412 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 48 | 924525 | 924593 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 49 | 4176889 | 4176957 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 50 | 1013548 | 1013616 | + | NZ_CP071320.1 | Serratia ureilytica |
| 51 | 3893490 | 3893558 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 52 | 4235424 | 4235492 | - | NZ_CP050150.1 | Hafnia alvei |
| 53 | 308859 | 308927 | + | NZ_CP050150.1 | Hafnia alvei |
| 54 | 3637367 | 3637435 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 55 | 1001781 | 1001849 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 56 | 4088973 | 4089041 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 57 | 4098563 | 4098631 | - | NZ_LT906479.1 | Serratia ficaria |
| 58 | 365071 | 365136 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 59 | 5119498 | 5119566 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 60 | 4944507 | 4944575 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 61 | 380213 | 380278 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 62 | 367951 | 368019 | - | NZ_CP011254.1 | Serratia fonticola |
| 63 | 3247625 | 3247693 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 64 | 4218138 | 4218206 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 65 | 326147 | 326215 | - | NZ_CP065640.1 | Serratia rubidaea |
| 66 | 4171904 | 4171972 | - | NZ_LR134494.1 | Serratia quinivorans |
| 67 | 4145445 | 4145513 | - | NZ_CP048784.1 | Serratia liquefaciens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP057657.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13242.8 | 0.84 | 46 | 36 | same-strand | HAD-hyrolase-like |
| 2 | PF00005.29 | 0.91 | 50 | 791.0 | opposite-strand | ABC transporter |
| 3 | PF09383.12 | 0.84 | 46 | 791.0 | opposite-strand | NIL domain |
| 4 | PF02463.21 | 0.84 | 46 | 791.0 | opposite-strand | RecF/RecN/SMC N terminal domain |
| 5 | PF13401.8 | 0.84 | 46 | 791.0 | opposite-strand | AAA domain |
| 6 | PF00528.24 | 0.89 | 49 | 1815.0 | opposite-strand | Binding-protein-dependent transport system inner membrane component |
| 7 | PF03180.16 | 0.84 | 46 | 2509 | opposite-strand | NlpA lipoprotein |
| 8 | PF16358.7 | 0.84 | 46 | 3438 | opposite-strand | RcsF lipoprotein |
| 9 | PF03466.22 | 0.6 | 33 | 6520.5 | opposite-strand | LysR substrate binding domain |
| 10 | PF00126.29 | 0.62 | 34 | 6519 | opposite-strand | Bacterial regulatory helix-turn-helix protein, lysR family |
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