* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00419.22
|
1.0
|
3
|
2242.5
|
same-strand
|
Fimbrial protein
|
2
|
PF00345.22
|
1.0
|
3
|
2621.0
|
same-strand
|
Pili and flagellar-assembly chaperone, PapD N-terminal domain
|
3
|
PF02753.19
|
1.0
|
3
|
2621.0
|
same-strand
|
Pili assembly chaperone PapD, C-terminal domain
|
4
|
PF00577.22
|
1.0
|
3
|
-56.0
|
same-strand
|
Outer membrane usher protein
|
5
|
PF13954.8
|
1.0
|
3
|
-56.0
|
same-strand
|
PapC N-terminal domain
|
6
|
PF13953.8
|
1.0
|
3
|
-56.0
|
same-strand
|
PapC C-terminal domain
|
7
|
PF09160.12
|
1.0
|
3
|
1102.0
|
same-strand
|
FimH, mannose binding
|
8
|
PF02447.18
|
1.0
|
3
|
2217.5
|
opposite-strand
|
GntP family permease
|
9
|
PF03786.15
|
0.67
|
2
|
3871
|
same-strand
|
D-mannonate dehydratase (UxuA)
|
++ More..