Result : EXP00590
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00590 |
| NCBI Accession ID | CP008957.1 |
| Organism | Escherichia coli O157:H7 str. EDL933 |
| Left | 5096574 |
| Right | 5096711 |
| Strand | + |
| Nucleotide Sequence | TTGTCGTACCTGGAGTCTTCCCTTTCGCCCCCCGTCTGGTCTACATTTGGGGGGCGAAAAAAAGTGGCTATCGGTGCGTGTATGCAGGAGAGTGCTATTCTGGCATTTCCGTCGCACTCGATGCTTAGCAAGCGATAA |
| Sequence | LSYLESSLSPPVWSTFGGRKKVAIGACMQESAILAFPSHSMLSKR |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 26911138 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 45 |
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| Conservation Analysis |
No. of Species: 55
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 5009075 | 5009212 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 4171575 | 4171712 | + | NZ_AP014857.1 | Escherichia albertii |
| 3 | 4200123 | 4200260 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 4219104 | 4219241 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 5 | 3142236 | 3142373 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 6 | 239091 | 239228 | + | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 133394 | 133531 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 8 | 838878 | 839015 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 9 | 3943561 | 3943698 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 10 | 832436 | 832573 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 11 | 266757 | 266894 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 12 | 2767306 | 2767443 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 13 | 3299159 | 3299296 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 14 | 224510 | 224647 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 15 | 2736926 | 2737063 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 16 | 3737922 | 3738059 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 17 | 2966903 | 2967040 | + | NZ_CP033744.1 | Citrobacter freundii |
| 18 | 2103997 | 2104134 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 19 | 160608 | 160745 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 20 | 489361 | 489498 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 21 | 3135352 | 3135489 | - | NZ_CP038469.1 | Citrobacter tructae |
| 22 | 242992 | 243129 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 23 | 4402987 | 4403124 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 24 | 3838504 | 3838641 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 25 | 4386564 | 4386701 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 26 | 4301590 | 4301727 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 27 | 4283087 | 4283224 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 28 | 4401826 | 4401963 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 29 | 5601738 | 5601875 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 30 | 5123788 | 5123925 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 31 | 2884322 | 2884459 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 32 | 1416339 | 1416476 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 33 | 2152993 | 2153130 | + | NZ_CP053416.1 | Salmonella bongori |
| 34 | 252539 | 252676 | + | NC_015968.1 | Enterobacter soli |
| 35 | 318168 | 318305 | + | NZ_LT615367.1 | Dickeya aquatica |
| 36 | 1348004 | 1348141 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 37 | 290547 | 290687 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 38 | 1840707 | 1840847 | + | NZ_CP065640.1 | Serratia rubidaea |
| 39 | 4760945 | 4761085 | - | NZ_CP071320.1 | Serratia ureilytica |
| 40 | 4757724 | 4757864 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 41 | 303068 | 303208 | + | NZ_LT906479.1 | Serratia ficaria |
| 42 | 272171 | 272311 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 43 | 183710 | 183850 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 44 | 1884240 | 1884395 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 45 | 4563009 | 4563164 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 46 | 280966 | 281121 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 47 | 268408 | 268563 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 48 | 4044039 | 4044194 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 49 | 3279976 | 3280116 | - | NZ_CP067057.1 | Rahnella aceris |
| 50 | 573815 | 573955 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 51 | 290141 | 290296 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 52 | 2248188 | 2248328 | + | NZ_CP011254.1 | Serratia fonticola |
| 53 | 1950490 | 1950630 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 54 | 3561592 | 3561732 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 55 | 304431 | 304571 | + | NZ_CP050150.1 | Hafnia alvei |
| 56 | 1491717 | 1491857 | - | NZ_CP023706.1 | Edwardsiella tarda |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP009756.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04353.15 | 0.89 | 49 | 3320.0 | opposite-strand | Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ |
| 2 | PF00293.30 | 1.0 | 55 | 2454.5 | same-strand | NUDIX domain |
| 3 | PF09297.13 | 1.0 | 55 | 2454.5 | same-strand | NADH pyrophosphatase zinc ribbon domain |
| 4 | PF01208.19 | 1.0 | 55 | 1343.0 | same-strand | Uroporphyrinogen decarboxylase (URO-D) |
| 5 | PF04493.16 | 1.0 | 55 | 662.0 | same-strand | Endonuclease V |
| 6 | PF04222.14 | 1.0 | 55 | 29.0 | same-strand | Protein of unknown function (DUF416) |
| 7 | PF00216.23 | 1.0 | 55 | 21.0 | same-strand | Bacterial DNA-binding protein |
| 8 | PF07356.14 | 1.0 | 55 | 306.5 | same-strand | Protein of unknown function (DUF1481) |
| 9 | PF01071.21 | 0.64 | 35 | 1056 | opposite-strand | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain |
| 10 | PF02844.17 | 0.64 | 35 | 1056 | opposite-strand | Phosphoribosylglycinamide synthetase, N domain |
| 11 | PF02843.18 | 0.62 | 34 | 1055.0 | opposite-strand | Phosphoribosylglycinamide synthetase, C domain |
| 12 | PF02655.16 | 0.64 | 35 | 1056 | opposite-strand | ATP-grasp domain |
| 13 | PF01808.20 | 0.64 | 35 | 2378 | opposite-strand | AICARFT/IMPCHase bienzyme |
| 14 | PF02142.24 | 0.64 | 35 | 2378 | opposite-strand | MGS-like domain |
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