* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00892.22
|
1.0
|
4
|
1565.0
|
opposite-strand
|
EamA-like transporter family
|
2
|
PF03061.24
|
1.0
|
4
|
1046
|
opposite-strand
|
Thioesterase superfamily
|
3
|
PF02253.17
|
1.0
|
4
|
12
|
same-strand
|
Phospholipase A1
|
4
|
PF09382.12
|
1.0
|
4
|
-46
|
same-strand
|
RQC domain
|
5
|
PF00271.33
|
1.0
|
4
|
-46
|
same-strand
|
Helicase conserved C-terminal domain
|
6
|
PF00570.25
|
1.0
|
4
|
-46
|
same-strand
|
HRDC domain
|
7
|
PF00270.31
|
1.0
|
4
|
-46
|
same-strand
|
DEAD/DEAH box helicase
|
8
|
PF16124.7
|
1.0
|
4
|
-46
|
same-strand
|
RecQ zinc-binding
|
9
|
PF01810.20
|
1.0
|
4
|
1853
|
same-strand
|
LysE type translocator
|
10
|
PF12146.10
|
1.0
|
4
|
3266
|
same-strand
|
Serine aminopeptidase, S33
|
11
|
PF00561.22
|
1.0
|
4
|
3266
|
same-strand
|
alpha/beta hydrolase fold
|
12
|
PF12697.9
|
0.75
|
3
|
3266.0
|
same-strand
|
Alpha/beta hydrolase family
|
13
|
PF08282.14
|
1.0
|
4
|
4296
|
same-strand
|
haloacid dehalogenase-like hydrolase
|
14
|
PF00702.28
|
0.75
|
3
|
4296
|
same-strand
|
haloacid dehalogenase-like hydrolase
|
15
|
PF10947.10
|
0.75
|
3
|
2944
|
opposite-strand
|
Protein of unknown function (DUF2628)
|
++ More..