ProsmORF-pred
Result : EXP00560
Protein Information
Information Type Description
Protein name EXP00560
NCBI Accession ID CP008957.1
Organism Escherichia coli O157:H7 str. EDL933
Left 2683122
Right 2683373
Strand -
Nucleotide Sequence ATGTCCCAGACGCTGAATGCCGATCAGGAACTGGTTTCTGATGTGGTTGCTTGCCAGTTGGTTATCAAACAAATTCTGGATGTTCTCGATGTAATCGCGCCCGTTGAAGTTCGTGAAAAAATGTCCAGTCAGCTGAAGAATATCGACTTTACTCATCATCCCGCTGCCGCAGACCCGGTCACCATGCGGGCAATCCAAAAAGCCATCGCGCTGATTGAGCTCAAGTTTACCCCACAAGGCGAATCCCATTAA
Sequence MSQTLNADQELVSDVVACQLVIKQILDVLDVIAPVEVREKMSSQLKNIDFTHHPAAADPVTMRAIQKAIALIELKFTPQGESH
Source of smORF Ribo-seq
Function Transcriptionally upregulated on exposure to Acanthamoeba castellanii. Pubmed:26911138
The ORF matches to the profile of pfam10964. Profile Description: Protein of unknown function (DUF2766). This family of proteins with unknown function appears to be restricted to Enterobacteriaceae.
Pubmed ID 26911138
Domain CDD:371318
Functional Category Manually curated function from literature
Uniprot ID P0AD11
ORF Length (Amino Acid) 83
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Conservation Analysis
Conservation Analysis
No. of Species: 86
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 2588797 2589048 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
2 1983791 1984042 - NC_004337.2 Shigella flexneri 2a str. 301
3 2562489 2562740 + NZ_CP061527.1 Shigella dysenteriae
4 1987507 1987758 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
5 2551726 2551977 - NZ_LR134340.1 Escherichia marmotae
6 1918310 1918561 - NZ_AP014857.1 Escherichia albertii
7 39067 39318 - NZ_CP053416.1 Salmonella bongori
8 1637048 1637299 - NZ_CP023529.1 Lelliottia amnigena
9 2075967 2076218 - NC_013716.1 Citrobacter rodentium ICC168
10 688407 688658 - NZ_AP019007.1 Enterobacter oligotrophicus
11 2881012 2881263 - NZ_CP027986.1 Enterobacter sichuanensis
12 1028115 1028366 + NC_009792.1 Citrobacter koseri ATCC BAA-895
13 604111 604362 + NZ_CP045769.1 Enterobacter cancerogenus
14 2814539 2814790 - NC_015968.1 Enterobacter soli
15 4236959 4237210 - NZ_LT556085.1 Citrobacter amalonaticus
16 695763 696014 - NZ_CP033744.1 Citrobacter freundii
17 2860920 2861171 - NZ_AP022508.1 Enterobacter bugandensis
18 2881863 2882114 - NZ_CP017184.1 Enterobacter roggenkampii
19 3081093 3081344 - NZ_CP043318.1 Enterobacter chengduensis
20 2105766 2106017 - NZ_CP017279.1 Enterobacter ludwigii
21 1484253 1484504 - NZ_CP038469.1 Citrobacter tructae
22 4401951 4402202 + NZ_CP025034.2 Enterobacter sp. SGAir0187
23 4437800 4438051 + NZ_CP044098.1 Citrobacter portucalensis
24 2700033 2700284 + NZ_CP045205.1 Citrobacter telavivensis
25 2971624 2971875 - NZ_CP009756.1 Enterobacter cloacae
26 131519 131770 + NZ_CP016337.1 Kosakonia sacchari
27 2937357 2937608 - NZ_CP063425.1 Kosakonia pseudosacchari
28 2133586 2133837 + NZ_CP014007.2 Kosakonia oryzae
29 1795253 1795504 + NZ_CP013990.1 Leclercia adecarboxylata
30 3070982 3071233 - NZ_CP015113.1 Kosakonia radicincitans
31 1885678 1885929 + NZ_CP035129.1 Kosakonia cowanii
32 34606 34857 + NZ_CP045300.1 Kosakonia arachidis
33 1798993 1799244 + NZ_AP023184.1 Buttiauxella agrestis
34 2273215 2273466 + NZ_CP036175.1 Klebsiella huaxiensis
35 1733012 1733263 + NZ_LR134201.1 Cedecea lapagei
36 1925732 1925983 + NZ_CP041247.1 Raoultella electrica
37 5279775 5280026 - NZ_CP026047.1 Raoultella planticola
38 1987283 1987534 + NZ_CP046672.1 Raoultella ornithinolytica
39 2755617 2755868 - NZ_CP012871.1 [Enterobacter] lignolyticus
40 1814696 1814947 + NZ_CP023525.1 Cedecea neteri
41 1813571 1813822 + NZ_CP065838.1 Klebsiella quasipneumoniae
42 2037721 2037972 + NZ_CP050508.1 Raoultella terrigena
43 1946760 1947011 + NZ_LR134475.1 Klebsiella aerogenes
44 4144635 4144886 - NZ_CP020388.1 Pluralibacter gergoviae
45 1537867 1538115 + NZ_CP013940.1 Cronobacter malonaticus LMG 23826
46 3398286 3398537 - NC_016845.1 Klebsiella pneumoniae subsp. pneumoniae HS11286
47 1881619 1881870 + NZ_CP054254.1 Klebsiella variicola
48 1810461 1810712 + NZ_CP045845.1 Kluyvera intermedia
49 2646349 2646597 - NZ_CP012257.1 Cronobacter universalis NCTC 9529
50 2178955 2179206 + NZ_CP060111.1 Klebsiella michiganensis
51 803340 803588 + NZ_CP027107.1 Cronobacter sakazakii
52 2744695 2744943 - NZ_CP012266.1 Cronobacter dublinensis subsp. dublinensis LMG 23823
53 2606056 2606304 - NZ_CP012264.1 Cronobacter condimenti 1330
54 1627743 1627994 + NC_017910.1 Shimwellia blattae DSM 4481 = NBRC 105725
55 1313505 1313753 + NZ_CP012268.1 Cronobacter muytjensii ATCC 51329
56 1700882 1701136 + NZ_CP054058.1 Scandinavium goeteborgense
57 3106091 3106330 - NZ_LR134494.1 Serratia quinivorans
58 4084986 4085225 - NZ_CP007044.2 Chania multitudinisentens RB-25
59 88240 88488 - NZ_CP042941.1 Atlantibacter hermannii
60 3099067 3099306 - NZ_CP048784.1 Serratia liquefaciens
61 692783 693022 - NZ_CP011078.1 Yersinia ruckeri
62 3111195 3111434 - NC_015567.1 Serratia plymuthica AS9
63 5289729 5289968 - NZ_CP011254.1 Serratia fonticola
64 2014691 2014930 + NZ_CP043727.1 Yersinia canariae
65 4429935 4430189 - NZ_CP040428.1 Jejubacter calystegiae
66 2613539 2613778 - NZ_LR134373.1 Yersinia pseudotuberculosis
67 3640123 3640362 + NZ_CP007230.1 Yersinia similis
68 1938115 1938360 - NZ_CP067057.1 Rahnella aceris
69 3025451 3025690 - NZ_LT906479.1 Serratia ficaria
70 1470309 1470548 + NZ_CP032487.1 Yersinia hibernica
71 2009720 2009968 + NZ_CP006569.1 Sodalis praecaptivus
72 3000685 3000924 - NZ_CP038662.1 Serratia nematodiphila
73 2297987 2298226 - NZ_CP016948.1 Serratia surfactantfaciens
74 2098995 2099234 + NZ_CP071320.1 Serratia ureilytica
75 943239 943478 - NZ_CP009787.1 Yersinia rohdei
76 1992973 1993212 + NZ_CP011118.1 Yersinia enterocolitica
77 3204289 3204528 + NZ_CP054043.1 Yersinia mollaretii ATCC 43969
78 4384183 4384422 - NZ_CP065640.1 Serratia rubidaea
79 5038110 5038349 + NZ_CP014136.1 Gibbsiella quercinecans
80 861051 861290 - NZ_CP009781.1 Yersinia aldovae 670-83
81 141453 141701 - NZ_LS483470.1 Leminorella richardii
82 2582067 2582306 - NZ_CP046293.1 Yersinia intermedia
83 2470901 2471146 - NZ_CP050150.1 Hafnia alvei
84 2115342 2115593 - NZ_CP016043.1 Edwardsiella hoshinae
85 1655830 1656081 + NC_012779.2 Edwardsiella ictaluri 93-146
86 166502 166753 - NZ_CP023706.1 Edwardsiella tarda
87 3562034 3562285 + NZ_CP006664.1 Edwardsiella anguillarum ET080813
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00210.26 0.64 55 1881.0 opposite-strand Ferritin-like domain
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