Result : EXP00557
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00557 |
| NCBI Accession ID | CP008957.1 |
| Organism | Escherichia coli O157:H7 str. EDL933 |
| Left | 2449651 |
| Right | 2449863 |
| Strand | + |
| Nucleotide Sequence | TTGAATGGTTTCAGCACTTTGGACTGTAGAACTCAACGACTCAAAAACAGGCACTCACGTTGGGCTGAGACACAAGCACACATTCCTCTGCACGCTTTTTCGATGTCACCTATCCTTAGAGCGAGGCACCACCACTTTCGTAATACCGGATTCGCTTTCCGGCAGTGCGCCCAGAAAGCAAGTTTCTCCCATCCTTCTCAACTTAAAGACTAA |
| Sequence | LNGFSTLDCRTQRLKNRHSRWAETQAHIPLHAFSMSPILRARHHHFRNTGFAFRQCAQKASFSHPSQLKD |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 26911138 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 70 |
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| Conservation Analysis |
No. of Species: 46
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1867134 | 1867346 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 2 | 1737055 | 1737267 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 3 | 1755478 | 1755690 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 4 | 2355327 | 2355539 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 5 | 2063409 | 2063621 | - | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 1690125 | 1690337 | + | NZ_AP014857.1 | Escherichia albertii |
| 7 | 1633501 | 1633713 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 1476133 | 1476345 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 195386 | 195598 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 10 | 4869421 | 4869633 | - | NZ_CP033744.1 | Citrobacter freundii |
| 11 | 722259 | 722471 | - | NZ_CP038469.1 | Citrobacter tructae |
| 12 | 1461337 | 1461549 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 13 | 3618074 | 3618286 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 14 | 3380123 | 3380335 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 15 | 402681 | 402893 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 16 | 2316990 | 2317202 | - | NZ_CP050508.1 | Raoultella terrigena |
| 17 | 2127705 | 2127917 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 18 | 3106715 | 3106927 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 19 | 2179587 | 2179799 | - | NZ_CP054254.1 | Klebsiella variicola |
| 20 | 4962689 | 4962901 | + | NZ_CP026047.1 | Raoultella planticola |
| 21 | 2755042 | 2755236 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 22 | 2306899 | 2307111 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 23 | 2161665 | 2161901 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 24 | 3012579 | 3012791 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 25 | 2222446 | 2222658 | - | NZ_CP041247.1 | Raoultella electrica |
| 26 | 1458842 | 1459048 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 27 | 1998764 | 1998973 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 28 | 847054 | 847260 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 29 | 2526055 | 2526273 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 30 | 2196194 | 2196388 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 31 | 4441367 | 4441561 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 32 | 1906329 | 1906523 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 33 | 1959778 | 1959972 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 34 | 564889 | 565083 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 1190320 | 1190514 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 36 | 1986728 | 1986922 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 37 | 1980358 | 1980552 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 38 | 1932510 | 1932704 | - | NC_015968.1 | Enterobacter soli |
| 39 | 2504516 | 2504731 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 40 | 1483264 | 1483458 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 41 | 1876950 | 1877153 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 42 | 2476730 | 2476957 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 43 | 2291744 | 2291947 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 44 | 1902340 | 1902543 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 45 | 1507083 | 1507286 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 46 | 2133155 | 2133358 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 47 | 1877858 | 1878061 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02657.17 | 0.98 | 45 | 3143.5 | opposite-strand | Fe-S metabolism associated domain |
| 2 | PF17969.3 | 1.0 | 46 | 2034 | opposite-strand | L,D-transpeptidase C-terminal domain |
| 3 | PF03734.16 | 1.0 | 46 | 2034 | opposite-strand | L,D-transpeptidase catalytic domain |
| 4 | PF01476.22 | 0.96 | 44 | 2033 | opposite-strand | LysM domain |
| 5 | PF04728.15 | 1.0 | 46 | 1731 | same-strand | Lipoprotein leucine-zipper |
| 6 | PF00224.23 | 1.0 | 46 | 8 | same-strand | Pyruvate kinase, barrel domain |
| 7 | PF02887.18 | 1.0 | 46 | 8 | same-strand | Pyruvate kinase, alpha/beta domain |
| 8 | PF00266.21 | 0.91 | 42 | 3572 | opposite-strand | Aminotransferase class-V |
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