Protein Information |
Information Type | Description |
---|---|
Protein name | EXP00548 |
NCBI Accession ID | CP008957.1 |
Organism | Escherichia coli O157:H7 str. EDL933 |
Left | 1894665 |
Right | 1894886 |
Strand | + |
Nucleotide Sequence | ATGGAGGATAAAATGCCAAACAAAAAAAGAAATCCGCTTATTGAAAAACAGATTGAATGCCTGGTAAATCAACTCAGGCAATCAGGGTTATTAAAAACTCATTCAGAGTTGAGGCTCACAGAATCAGCATTCGACGATAAATTAAATAATGTCCTTTATAATGGCATTATTGATTTTAATCGTTCTGTTGGTCGCCGCGGCCCTGCTGGTGTTTCCTTATAA |
Sequence | MEDKMPNKKRNPLIEKQIECLVNQLRQSGLLKTHSELRLTESAFDDKLNNVLYNGIIDFNRSVGRRGPAGVSL |
Source of smORF | Ribo-seq |
Function | |
Pubmed ID | 26911138 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 73 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 2015401 | 2015622 | - | NZ_AP014857.1 | Escherichia albertii |
2 | 2201033 | 2201254 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF14549.8 | 1.0 | 2 | 1643.5 | same-strand | DNA-binding transcriptional regulator Cro |
2 | PF07151.14 | 1.0 | 2 | 651.0 | opposite-strand | Protein of unknown function (DUF1391) |