Result : B1LNC2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0370 protein YpfN |
| NCBI Accession ID | CP000970.1 |
| Organism | Escherichia coli (strain SMS-3-5 / SECEC) |
| Left | 2677071 |
| Right | 2677271 |
| Strand | + |
| Nucleotide Sequence | ATGGACTGGCTGGCTAAATATTGGTGGATTCTGGTGATTGTCTTTTTGGTAGGCGTCCTGCTGAACGTGATTAAAGATCTCAAGCGCGTCGACCATAAGAAATTTCTCGCCAACAAGCCGGAGCTTCCCCCGCATCGTGATTTCAACGATAAGTGGGACGATGACGACGACTGGCCGAAAAAGGATCAACCGAAGAAGTAA |
| Sequence | MDWLAKYWWILVIVFLVGVLLNVIKDLKRVDHKKFLANKPELPPHRDFNDKWDDDDDWPKKDQPKK |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl23933. Profile Description: Uncharacterized protein family (UPF0370). hypothetical protein; Provisional |
| Pubmed ID | 18708504 |
| Domain | CDD:420102 |
| Functional Category | Others |
| Uniprot ID | B1LNC2 |
| ORF Length (Amino Acid) | 66 |
++ More..
| Conservation Analysis |
No. of Species: 136
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4813328 | 4813528 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 2 | 1974988 | 1975188 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 3 | 2547835 | 2548035 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 4 | 1155901 | 1156101 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 3132255 | 3132455 | + | NZ_LR134340.1 | Escherichia marmotae |
| 6 | 4247165 | 4247365 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 7 | 2580819 | 2581019 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 8 | 2592762 | 2592962 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 9 | 3309021 | 3309221 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 10 | 2559745 | 2559945 | + | NZ_AP014857.1 | Escherichia albertii |
| 11 | 307615 | 307815 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 12 | 3820884 | 3821084 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 13 | 1409620 | 1409820 | - | NZ_CP050508.1 | Raoultella terrigena |
| 14 | 4865852 | 4866040 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 15 | 2809806 | 2809994 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 16 | 2728665 | 2728853 | - | NZ_CP019706.1 | Pantoea alhagi |
| 17 | 2491166 | 2491354 | + | NZ_CP028271.1 | Mixta intestinalis |
| 18 | 1157306 | 1157494 | - | NZ_LR134201.1 | Cedecea lapagei |
| 19 | 1221985 | 1222176 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 20 | 1278072 | 1278272 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 21 | 1105594 | 1105782 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 22 | 2582265 | 2582453 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 23 | 569431 | 569631 | + | NZ_CP053416.1 | Salmonella bongori |
| 24 | 1185624 | 1185812 | - | NZ_CP023525.1 | Cedecea neteri |
| 25 | 2689023 | 2689211 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 26 | 1315307 | 1315495 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 27 | 126946 | 127143 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 28 | 1328438 | 1328635 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 29 | 577732 | 577929 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 30 | 1195558 | 1195749 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 31 | 3330869 | 3331066 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 32 | 1909400 | 1909597 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 33 | 1313560 | 1313760 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 34 | 2552068 | 2552253 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 35 | 39913 | 40098 | + | NZ_CP011254.1 | Serratia fonticola |
| 36 | 2598848 | 2599048 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 37 | 1381117 | 1381311 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 38 | 1436135 | 1436329 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 39 | 2902893 | 2903084 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 40 | 4884263 | 4884457 | + | NZ_CP007230.1 | Yersinia similis |
| 41 | 1548287 | 1548481 | + | NZ_CP009787.1 | Yersinia rohdei |
| 42 | 1183294 | 1183485 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 43 | 1319234 | 1319428 | - | NZ_CP043727.1 | Yersinia canariae |
| 44 | 3331640 | 3331831 | + | NZ_CP032487.1 | Yersinia hibernica |
| 45 | 822010 | 822198 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 46 | 2550234 | 2550428 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 47 | 1310647 | 1310835 | - | NZ_CP025799.1 | Dickeya zeae |
| 48 | 1176382 | 1176594 | - | NZ_CP065534.1 | Lonsdalea populi |
| 49 | 105736 | 105924 | + | NZ_CP065640.1 | Serratia rubidaea |
| 50 | 3126541 | 3126726 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 51 | 3816460 | 3816645 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 52 | 2915196 | 2915384 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 53 | 2249897 | 2250109 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 54 | 3179493 | 3179681 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 55 | 270359 | 270547 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 56 | 999529 | 999717 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 57 | 3116185 | 3116373 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 58 | 1194410 | 1194607 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 59 | 237923 | 238117 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 60 | 573761 | 573967 | + | NZ_CP023706.1 | Edwardsiella tarda |
| 61 | 3432254 | 3432448 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 62 | 1495778 | 1495972 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 63 | 3839843 | 3840028 | + | NZ_LT906479.1 | Serratia ficaria |
| 64 | 3305516 | 3305710 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 65 | 1291471 | 1291656 | - | NZ_CP071320.1 | Serratia ureilytica |
| 66 | 4937003 | 4937194 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 67 | 1371713 | 1371901 | - | NC_014500.1 | Dickeya dadantii 3937 |
| 68 | 1359554 | 1359754 | - | NZ_CP041247.1 | Raoultella electrica |
| 69 | 333573 | 333773 | + | NZ_CP026047.1 | Raoultella planticola |
| 70 | 1370791 | 1370991 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 71 | 3476764 | 3476952 | - | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 72 | 1429973 | 1430161 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 73 | 3252717 | 3252905 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 74 | 3258734 | 3258919 | + | NZ_CP050150.1 | Hafnia alvei |
| 75 | 1909335 | 1909544 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 76 | 3830267 | 3830452 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 77 | 3388724 | 3388912 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 78 | 1239252 | 1239440 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 79 | 1601018 | 1601221 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 80 | 2520018 | 2520224 | + | NZ_CP016043.1 | Edwardsiella hoshinae |
| 81 | 684688 | 684882 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 82 | 3338363 | 3338554 | + | NZ_CP026377.1 | Mixta gaviniae |
| 83 | 1352017 | 1352205 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 84 | 1365382 | 1365567 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 85 | 2108948 | 2109139 | - | NZ_CP048796.1 | Providencia vermicola |
| 86 | 1199477 | 1199674 | - | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 87 | 1604752 | 1604940 | + | NZ_CP049115.1 | Pantoea stewartii |
| 88 | 1349196 | 1349399 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 89 | 3910500 | 3910703 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 90 | 1344095 | 1344298 | - | NZ_CP054254.1 | Klebsiella variicola |
| 91 | 3057848 | 3058036 | + | NZ_CP015581.1 | Tatumella citrea |
| 92 | 4154220 | 4154411 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 93 | 3943088 | 3943279 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 94 | 3063895 | 3064083 | + | NZ_LT615367.1 | Dickeya aquatica |
| 95 | 3065558 | 3065773 | - | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 96 | 2046739 | 2046927 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 97 | 2046474 | 2046665 | - | NZ_LS483422.1 | Providencia heimbachae |
| 98 | 3127830 | 3128021 | + | NZ_CP061511.1 | Mixta calida |
| 99 | 2221861 | 2222070 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 100 | 1277036 | 1277236 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 101 | 1136270 | 1136458 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 102 | 4480421 | 4480621 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 103 | 3482906 | 3483106 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 104 | 3231211 | 3231399 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 105 | 1292200 | 1292394 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 106 | 3782375 | 3782569 | + | NZ_CP026364.1 | Proteus hauseri |
| 107 | 2572111 | 2572305 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 108 | 2677765 | 2677962 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 109 | 3420673 | 3420870 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 110 | 2140831 | 2141028 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 111 | 3894345 | 3894530 | + | NZ_LR134494.1 | Serratia quinivorans |
| 112 | 1656288 | 1656485 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 113 | 1142465 | 1142662 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 114 | 3387643 | 3387834 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 115 | 3404407 | 3404604 | + | NC_015968.1 | Enterobacter soli |
| 116 | 1166684 | 1166875 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 117 | 3383990 | 3384187 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 118 | 3501610 | 3501807 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 119 | 1445175 | 1445366 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 120 | 669835 | 670026 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 121 | 1445534 | 1445725 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 122 | 1516952 | 1517155 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 123 | 3391000 | 3391197 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 124 | 3863072 | 3863269 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 125 | 3713153 | 3713350 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 126 | 1472765 | 1472965 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 127 | 3691086 | 3691286 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 128 | 4521863 | 4522063 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 129 | 1021768 | 1021971 | - | NZ_LS483470.1 | Leminorella richardii |
| 130 | 4771063 | 4771263 | - | NZ_CP038469.1 | Citrobacter tructae |
| 131 | 1115031 | 1115222 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 132 | 1277219 | 1277419 | + | NZ_CP033744.1 | Citrobacter freundii |
| 133 | 2291398 | 2291583 | + | NZ_CP067057.1 | Rahnella aceris |
| 134 | 3969495 | 3969683 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 135 | 4361175 | 4361369 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 136 | 3384869 | 3385066 | + | NZ_CP046293.1 | Yersinia intermedia |
| 137 | 3009455 | 3009646 | + | NZ_CP029736.1 | Providencia rettgeri |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LT556085.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03960.17 | 0.99 | 135 | 1163.0 | same-strand | ArsC family |
| 2 | PF01546.30 | 0.99 | 135 | 30.0 | same-strand | Peptidase family M20/M25/M40 |
| 3 | PF07687.16 | 0.99 | 135 | 30.0 | same-strand | Peptidase dimerisation domain |
| 4 | PF02230.18 | 0.76 | 104 | 53 | opposite-strand | Phospholipase/Carboxylesterase |
| 5 | PF05127.16 | 0.76 | 104 | 826 | opposite-strand | Helicase |
| 6 | PF17176.6 | 0.91 | 124 | 826 | opposite-strand | tRNA-binding domain |
| 7 | PF08351.13 | 0.88 | 120 | 828 | opposite-strand | Domain of unknown function (DUF1726) |
| 8 | PF04228.15 | 0.68 | 93 | 2851.5 | opposite-strand | Putative neutral zinc metallopeptidase |
| 9 | PF01259.20 | 0.8 | 109 | 3846.0 | opposite-strand | SAICAR synthetase |
| 10 | PF06804.13 | 0.71 | 97 | 4690 | opposite-strand | NlpB/DapX lipoprotein |
++ More..