Result : EXP00508
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00508 |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 2648414 |
| Right | 2648473 |
| Strand | - |
| Nucleotide Sequence | ATGATTGAACGTGAACTGGGGAACTGGAAAGATTTTATCGAAGTCATGCTTCGTAAATAA |
| Sequence | MIERELGNWKDFIEVMLRK |
| Source of smORF | Ribo-seq |
| Function | cytoplasm [GO:0005737];INDUCTION: Constitutively expressed (Pubmed:19121005), increases in stationary phase and at 45 degrees Celsius (Pubmed:19121005) (at protein level) Pubmed:19121005,19734316 The ORF matches to the profile of NF033843. Profile Description: protein YpfM. |
| Pubmed ID | 28122954 |
| Domain | CDD:411412 |
| Functional Category | Gene Ontology/Expression based functional assignment |
| Uniprot ID | A5A621 |
| ORF Length (Amino Acid) | 19 |
++ More..
| Conservation Analysis |
No. of Species: 105
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3307066 | 3307125 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 2 | 1977092 | 1977151 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 3 | 2545867 | 2545926 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 4 | 4811366 | 4811425 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 5 | 1275256 | 1275315 | - | NZ_CP033744.1 | Citrobacter freundii |
| 6 | 3822989 | 3823048 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 7 | 2596861 | 2596920 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 8 | 4773167 | 4773226 | + | NZ_CP038469.1 | Citrobacter tructae |
| 9 | 309741 | 309800 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 1279167 | 1279226 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 11 | 2557786 | 2557845 | - | NZ_AP014857.1 | Escherichia albertii |
| 12 | 2590807 | 2590866 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 13 | 2578864 | 2578923 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 14 | 4249272 | 4249331 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 15 | 567444 | 567503 | - | NZ_CP053416.1 | Salmonella bongori |
| 16 | 3130302 | 3130361 | - | NZ_LR134340.1 | Escherichia marmotae |
| 17 | 1157997 | 1158056 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 18 | 4524484 | 4524543 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 19 | 3113874 | 3113933 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 20 | 579937 | 579996 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 21 | 129044 | 129103 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 22 | 3711193 | 3711252 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 23 | 2675805 | 2675864 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 24 | 3499650 | 3499709 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 25 | 3865170 | 3865229 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 26 | 3402449 | 3402508 | - | NC_015968.1 | Enterobacter soli |
| 27 | 3418713 | 3418772 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 28 | 3389040 | 3389099 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 29 | 3328961 | 3329020 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 30 | 3382031 | 3382090 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 31 | 1140504 | 1140563 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 32 | 1330538 | 1330597 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 33 | 2138872 | 2138931 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 34 | 3250408 | 3250467 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 35 | 824448 | 824507 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 36 | 3177185 | 3177244 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 37 | 1001966 | 1002025 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 38 | 272796 | 272855 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 39 | 1224107 | 1224166 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 40 | 1185351 | 1185410 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 41 | 2489287 | 2489346 | - | NZ_CP028271.1 | Mixta intestinalis |
| 42 | 1519054 | 1519113 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 43 | 3688806 | 3688865 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 44 | 1372917 | 1372976 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 45 | 1346175 | 1346234 | + | NZ_CP054254.1 | Klebsiella variicola |
| 46 | 331586 | 331645 | - | NZ_CP026047.1 | Raoultella planticola |
| 47 | 1911604 | 1911663 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 48 | 1475186 | 1475245 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 49 | 3908564 | 3908623 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 50 | 1351277 | 1351336 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 51 | 3480629 | 3480688 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 52 | 4490363 | 4490422 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 53 | 1107799 | 1107858 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 54 | 1315657 | 1315716 | + | NZ_LR134475.1 | Klebsiella aerogenes |
| 55 | 4863987 | 4864046 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 56 | 2905098 | 2905157 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 57 | 1280161 | 1280220 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 58 | 3125941 | 3126000 | - | NZ_CP061511.1 | Mixta calida |
| 59 | 2736655 | 2736714 | + | NZ_CP019706.1 | Pantoea alhagi |
| 60 | 1411833 | 1411892 | + | NZ_CP050508.1 | Raoultella terrigena |
| 61 | 1361680 | 1361739 | + | NZ_CP041247.1 | Raoultella electrica |
| 62 | 1187532 | 1187591 | + | NZ_CP023525.1 | Cedecea neteri |
| 63 | 1159214 | 1159273 | + | NZ_LR134201.1 | Cedecea lapagei |
| 64 | 1200279 | 1200338 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 65 | 3336472 | 3336531 | - | NZ_CP026377.1 | Mixta gaviniae |
| 66 | 2683715 | 2683774 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 67 | 2579006 | 2579065 | - | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 68 | 1117637 | 1117696 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 69 | 2795865 | 2795924 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 70 | 3385184 | 3385243 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 71 | 1602783 | 1602845 | - | NZ_CP049115.1 | Pantoea stewartii |
| 72 | 1317400 | 1317462 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 73 | 3386233 | 3386292 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 74 | 2912701 | 2912760 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 75 | 3308123 | 3308182 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 76 | 672440 | 672499 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 77 | 240531 | 240590 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 78 | 1498386 | 1498445 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 79 | 3611441 | 3611500 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 80 | 1448139 | 1448198 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 81 | 3429781 | 3429840 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 82 | 218614 | 218673 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 83 | 1447780 | 1447839 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 84 | 1427481 | 1427540 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 85 | 1374335 | 1374394 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 86 | 3479384 | 3479443 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 87 | 1354673 | 1354732 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 88 | 3061399 | 3061458 | - | NZ_LT615367.1 | Dickeya aquatica |
| 89 | 1313374 | 1313433 | + | NZ_CP025799.1 | Dickeya zeae |
| 90 | 1241833 | 1241892 | + | NC_012880.1 | Musicola paradisiaca Ech703 |
| 91 | 3695728 | 3695790 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 92 | 2288944 | 2289003 | - | NZ_CP067057.1 | Rahnella aceris |
| 93 | 2922160 | 2922222 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 94 | 1106877 | 1106939 | + | NZ_CP038853.1 | Pantoea vagans |
| 95 | 1138392 | 1138454 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 96 | 3328489 | 3328551 | - | NZ_CP032487.1 | Yersinia hibernica |
| 97 | 1325908 | 1325970 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 98 | 1545132 | 1545194 | - | NZ_CP009787.1 | Yersinia rohdei |
| 99 | 1604319 | 1604378 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 100 | 2807649 | 2807708 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 101 | 1162963 | 1163025 | - | NZ_CP011078.1 | Yersinia ruckeri |
| 102 | 3373766 | 3373828 | - | NZ_CP046293.1 | Yersinia intermedia |
| 103 | 4353574 | 4353636 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 104 | 3972829 | 3972891 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 105 | 4873005 | 4873067 | - | NZ_CP007230.1 | Yersinia similis |
| 106 | 1392332 | 1392394 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00873.21 | 0.79 | 83 | 108.5 | opposite-strand | AcrB/AcrD/AcrF family |
| 2 | PF03960.17 | 0.94 | 99 | 388.0 | opposite-strand | ArsC family |
| 3 | PF01546.30 | 0.93 | 98 | 749 | opposite-strand | Peptidase family M20/M25/M40 |
| 4 | PF07687.16 | 0.93 | 98 | 749 | opposite-strand | Peptidase dimerisation domain |
| 5 | PF13980.8 | 0.92 | 97 | 1931.5 | opposite-strand | Uncharacterised protein family (UPF0370) |
| 6 | PF02230.18 | 0.7 | 74 | 2209 | same-strand | Phospholipase/Carboxylesterase |
++ More..