* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF06316.13
|
1.0
|
2
|
2184.5
|
opposite-strand
|
Enterobacterial Ail/Lom protein
|
2
|
PF13505.8
|
1.0
|
2
|
2184.5
|
opposite-strand
|
Outer membrane protein beta-barrel domain
|
3
|
PF09864.11
|
1.0
|
2
|
626.5
|
same-strand
|
Membrane-bound lysozyme-inhibitor of c-type lysozyme
|
4
|
PF00011.23
|
1.0
|
2
|
314.0
|
opposite-strand
|
Hsp20/alpha crystallin family
|
5
|
PF17886.3
|
1.0
|
2
|
314.0
|
opposite-strand
|
HSP20-like domain found in ArsA
|
6
|
PF01292.22
|
1.0
|
2
|
1765.5
|
same-strand
|
Prokaryotic cytochrome b561
|
7
|
PF13146.8
|
1.0
|
2
|
2442.5
|
same-strand
|
TRL-like protein family
|
8
|
PF00496.24
|
1.0
|
2
|
3434.0
|
opposite-strand
|
Bacterial extracellular solute-binding proteins, family 5 Middle
|
++ More..