* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00324.23
|
1.0
|
2
|
5491.5
|
same-strand
|
Amino acid permease
|
2
|
PF13520.8
|
1.0
|
2
|
5491.5
|
same-strand
|
Amino acid permease
|
3
|
PF07219.15
|
1.0
|
2
|
3172.0
|
opposite-strand
|
HemY protein N-terminus
|
4
|
PF07719.19
|
1.0
|
2
|
3172.0
|
opposite-strand
|
Tetratricopeptide repeat
|
5
|
PF04375.16
|
1.0
|
2
|
1997.0
|
opposite-strand
|
HemX, putative uroporphyrinogen-III C-methyltransferase
|
6
|
PF02602.17
|
1.0
|
2
|
1235.0
|
opposite-strand
|
Uroporphyrinogen-III synthase HemD
|
7
|
PF01379.22
|
1.0
|
2
|
276.0
|
opposite-strand
|
Porphobilinogen deaminase, dipyromethane cofactor binding domain
|
8
|
PF03900.17
|
1.0
|
2
|
276.0
|
opposite-strand
|
Porphobilinogen deaminase, C-terminal domain
|
9
|
PF01295.20
|
1.0
|
2
|
39.0
|
same-strand
|
Adenylate cyclase, class-I
|
10
|
PF12633.9
|
1.0
|
2
|
39.0
|
same-strand
|
Adenylate cyclase NT domain
|
11
|
PF01491.18
|
1.0
|
2
|
3441.0
|
opposite-strand
|
Frataxin-like domain
|
++ More..