Result : EXP00473
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00473 |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 3184958 |
| Right | 3185077 |
| Strand | + |
| Nucleotide Sequence | GTGGGCAGTTGTAATTTCCGCAGTAGGGTTGGCTTTTGCGGTATCCGGATGCAGCAGCGATTATGTAATGGCGACGAAAGATGGTCGTATGATCCTGACCGATGGAAAACCACAAGTTGA |
| Sequence | VGSCNFRSRVGFCGIRMQQRLCNGDERWSYDPDRWKTTS |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 28122954 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 39 |
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| Conservation Analysis |
No. of Species: 16
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3165155 | 3165274 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 1759210 | 1759329 | + | NZ_CP033744.1 | Citrobacter freundii |
| 3 | 3342257 | 3342376 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 4 | 3046683 | 3046796 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 5 | 3702095 | 3702217 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 6 | 959567 | 959674 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 7 | 894242 | 894349 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 8 | 906251 | 906358 | - | NZ_CP054254.1 | Klebsiella variicola |
| 9 | 4341405 | 4341512 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 10 | 5271320 | 5271439 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 11 | 728341 | 728448 | + | NZ_CP026047.1 | Raoultella planticola |
| 12 | 947140 | 947247 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 13 | 890338 | 890445 | - | NZ_CP041247.1 | Raoultella electrica |
| 14 | 953984 | 954091 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 15 | 4024988 | 4025095 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 16 | 861484 | 861591 | - | NZ_CP035129.1 | Kosakonia cowanii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02896.20 | 0.75 | 12 | 2830.5 | opposite-strand | PEP-utilising enzyme, PEP-binding domain |
| 2 | PF05524.15 | 0.75 | 12 | 2830.5 | opposite-strand | PEP-utilising enzyme, N-terminal |
| 3 | PF00391.25 | 0.75 | 12 | 2830.5 | opposite-strand | PEP-utilising enzyme, mobile domain |
| 4 | PF01590.28 | 0.75 | 12 | 2830.5 | opposite-strand | GAF domain |
| 5 | PF13185.8 | 0.75 | 12 | 2830.5 | opposite-strand | GAF domain |
| 6 | PF13492.8 | 0.75 | 12 | 2830.5 | opposite-strand | GAF domain |
| 7 | PF00293.30 | 0.75 | 12 | 2294.0 | opposite-strand | NUDIX domain |
| 8 | PF02976.17 | 1.0 | 16 | 910.0 | same-strand | DNA mismatch repair enzyme MutH |
| 9 | PF03741.18 | 0.94 | 15 | 133 | same-strand | Integral membrane protein TerC family |
| 10 | PF06004.14 | 1.0 | 16 | -107.0 | same-strand | Bacterial protein of unknown function (DUF903) |
| 11 | PF00248.23 | 1.0 | 16 | 259.5 | same-strand | Aldo/keto reductase family |
| 12 | PF07690.18 | 0.94 | 15 | 1424 | opposite-strand | Major Facilitator Superfamily |
| 13 | PF00501.30 | 0.94 | 15 | 2610 | opposite-strand | AMP-binding enzyme |
| 14 | PF01553.23 | 0.94 | 15 | 2610 | opposite-strand | Acyltransferase |
| 15 | PF13377.8 | 0.81 | 13 | 5433 | same-strand | Periplasmic binding protein-like domain |
| 16 | PF00356.23 | 0.81 | 13 | 5433 | same-strand | Bacterial regulatory proteins, lacI family |
| 17 | PF13407.8 | 0.81 | 13 | 5433 | same-strand | Periplasmic binding protein domain |
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