Result : EXP00472
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00472 |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 3096835 |
| Right | 3097008 |
| Strand | + |
| Nucleotide Sequence | ATGCTGGTGAAACGTGTTTATCCCCGCTGGCGCGGGGAACATTTTTCAGCCCTTGTCGACTGCGGAACGCCCCTCGGTTTATCCCCGCTGGCGCGGGGAACACGCGAAATAGTGGGGAAAAACCCCTGGTTAACCCGGTTTATCCCCGCTGGCGCGGGAAACACTAGGCCTTGA |
| Sequence | MLVKRVYPRWRGEHFSALVDCGTPLGLSPLARGTREIVGKNPWLTRFIPAGAGNTRP |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 28122954 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 57 |
++ More..
| Conservation Analysis |
No. of Species: 41
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3076605 | 3076778 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 3076840 | 3077022 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 3 | 3077499 | 3077681 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 4 | 3096095 | 3096292 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 5 | 4225641 | 4225808 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 6 | 4225986 | 4226129 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 7 | 4229889 | 4230089 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 8 | 4226655 | 4226840 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 9 | 4225937 | 4226110 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 10 | 4230740 | 4230925 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 11 | 892982 | 893173 | + | NZ_CP053416.1 | Salmonella bongori |
| 12 | 910162 | 910341 | + | NZ_CP053416.1 | Salmonella bongori |
| 13 | 73431 | 73601 | - | NZ_CP028271.1 | Mixta intestinalis |
| 14 | 3977101 | 3977286 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 15 | 1116408 | 1116599 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 16 | 1117085 | 1117264 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 17 | 1143858 | 1144058 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 18 | 1144483 | 1144659 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 19 | 3860276 | 3860434 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 20 | 3843189 | 3843395 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 21 | 4398695 | 4398880 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 22 | 3139623 | 3139799 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 23 | 3138033 | 3138218 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 24 | 468327 | 468527 | - | NZ_LT615367.1 | Dickeya aquatica |
| 25 | 712848 | 713018 | - | NZ_LT615367.1 | Dickeya aquatica |
| 26 | 467961 | 468158 | - | NZ_LT615367.1 | Dickeya aquatica |
| 27 | 713092 | 713265 | - | NZ_LT615367.1 | Dickeya aquatica |
| 28 | 713028 | 713189 | - | NZ_LT615367.1 | Dickeya aquatica |
| 29 | 713308 | 713448 | - | NZ_LT615367.1 | Dickeya aquatica |
| 30 | 467364 | 467558 | - | NZ_LT615367.1 | Dickeya aquatica |
| 31 | 3204327 | 3204494 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 32 | 3203958 | 3204128 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 33 | 3225267 | 3225458 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 34 | 3203882 | 3204061 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 35 | 3204547 | 3204693 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 36 | 2406380 | 2406562 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 37 | 2406194 | 2406334 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 38 | 2407656 | 2407847 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 39 | 2406441 | 2406620 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 40 | 39230 | 39403 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 41 | 40528 | 40698 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 42 | 39339 | 39485 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 43 | 40220 | 40384 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 44 | 41113 | 41259 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 45 | 35176 | 35367 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 46 | 4501203 | 4501373 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 47 | 4501267 | 4501440 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 48 | 4501572 | 4501730 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 49 | 3627838 | 3628020 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 50 | 3627783 | 3627965 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 51 | 5186826 | 5186996 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 52 | 5188397 | 5188579 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 53 | 5185179 | 5185343 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 54 | 5199597 | 5199761 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 55 | 5186866 | 5187012 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 56 | 2353861 | 2354010 | + | NZ_CP009460.1 | Dickeya fangzhongdai |
| 57 | 2904247 | 2904429 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 58 | 2878345 | 2878488 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 59 | 2216217 | 2216357 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 60 | 4351602 | 4351778 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 61 | 4350491 | 4350688 | + | NZ_CP043046.1 | Pigmentiphaga aceris |
| 62 | 958560 | 958742 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 63 | 958148 | 958312 | + | NZ_CP012943.1 | Ralstonia solanacearum |
| 64 | 3055217 | 3055411 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 65 | 3066886 | 3067026 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 66 | 2916404 | 2916553 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 67 | 2916184 | 2916342 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 68 | 1600697 | 1600846 | + | NZ_CP007031.1 | Marichromatium purpuratum 984 |
| 69 | 724196 | 724351 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 70 | 725127 | 725267 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 71 | 725045 | 725206 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 72 | 731022 | 731171 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 73 | 726165 | 726305 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 74 | 724636 | 724779 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 75 | 726694 | 726855 | - | NZ_AP018724.1 | Sulfurivermis fontis |
| 76 | 482500 | 482703 | - | NC_018012.1 | Thiocystis violascens DSM 198 |
| 77 | 1615252 | 1615419 | + | NZ_CP042808.1 | Acetobacter oryzoeni |
| 78 | 2292617 | 2292787 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 79 | 1888745 | 1888924 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 80 | 1117727 | 1117912 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 81 | 1075492 | 1075659 | - | NZ_CP060244.1 | Entomobacter blattae |
| 82 | 3463925 | 3464095 | + | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 83 | 2284854 | 2285042 | + | NZ_HG322949.1 | Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628 |
| 84 | 1603653 | 1603799 | + | NZ_LT906481.1 | Corynebacterium urealyticum |
| 85 | 1903219 | 1903368 | - | NZ_LS483459.1 | Corynebacterium jeikeium |
| 86 | 3406717 | 3406890 | - | NZ_CP045508.1 | Desulfolutivibrio sulfoxidireducens |
| 87 | 3398304 | 3398453 | - | NZ_CP045508.1 | Desulfolutivibrio sulfoxidireducens |
| 88 | 2154199 | 2154384 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 89 | 890746 | 890901 | + | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 90 | 574865 | 575065 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 91 | 3021989 | 3022171 | - | NZ_CP029495.1 | Chromobacterium phragmitis |
| 92 | 953318 | 953479 | - | NZ_LR778301.1 | Denitratisoma oestradiolicum |
| 93 | 1840622 | 1840804 | + | NZ_CP011546.1 | Corynebacterium uterequi |
| 94 | 227391 | 227531 | - | NZ_CP046883.1 | Corynebacterium anserum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09707.12 | 0.78 | 32 | 866 | opposite-strand | CRISPR-associated protein (Cas Cas2CT1978) |
| 2 | PF08798.13 | 0.73 | 30 | 1973 | opposite-strand | CRISPR associated protein |
| 3 | PF09704.12 | 0.71 | 29 | 2526.0 | opposite-strand | CRISPR-associated protein (Cas Cas5) |
| 4 | PF09344.12 | 0.66 | 27 | 3216.0 | opposite-strand | CT1975-like protein |
++ More..