* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00268.23
|
1.0
|
2
|
5151.0
|
same-strand
|
Ribonucleotide reductase, small chain
|
2
|
PF00005.29
|
1.0
|
2
|
3593.5
|
same-strand
|
ABC transporter
|
3
|
PF00571.30
|
1.0
|
2
|
3593.5
|
same-strand
|
CBS domain
|
4
|
PF00528.24
|
1.0
|
2
|
2536.5
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
5
|
PF04069.14
|
1.0
|
2
|
1474.0
|
same-strand
|
Substrate binding domain of ABC-type glycine betaine transport system
|
6
|
PF06779.16
|
1.0
|
2
|
125.0
|
same-strand
|
Uncharacterised MFS-type transporter YbfB
|
7
|
PF01047.24
|
1.0
|
2
|
91.0
|
same-strand
|
MarR family
|
8
|
PF12802.9
|
1.0
|
2
|
91.0
|
same-strand
|
MarR family
|
9
|
PF13463.8
|
1.0
|
2
|
91.0
|
same-strand
|
Winged helix DNA-binding domain
|
10
|
PF13601.8
|
1.0
|
2
|
91.0
|
same-strand
|
Winged helix DNA-binding domain
|
11
|
PF00529.22
|
1.0
|
2
|
748.0
|
same-strand
|
Cation efflux system protein CusB domain 1
|
12
|
PF13533.8
|
1.0
|
2
|
748.0
|
same-strand
|
Biotin-lipoyl like
|
13
|
PF07690.18
|
1.0
|
2
|
1937.0
|
same-strand
|
Major Facilitator Superfamily
|
14
|
PF02664.17
|
1.0
|
2
|
4429.0
|
opposite-strand
|
S-Ribosylhomocysteinase (LuxS)
|
++ More..