Result : EXP00457
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00457 |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S |
| Left | 2322136 |
| Right | 2322219 |
| Strand | + |
| Nucleotide Sequence | ATGAAAATTCTTCTATGGGCAATCTTAATTATTTTTCTGATTGGGCTGTTGGTGGTAACGGGCGTGTTTAAGATGATTTTCTGA |
| Sequence | MKILLWAILIIFLIGLLVVTGVFKMIF |
| Source of smORF | Ribo-seq |
| Function | Found to be membrane localised by experiment. Pubmed:19121005 |
| Pubmed ID | 28122954 |
| Domain | |
| Functional Category | Manually curated function from literature |
| Uniprot ID | C1P609 |
| ORF Length (Amino Acid) | 27 |
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| Conservation Analysis |
No. of Species: 52
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2850166 | 2850249 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 2 | 3191340 | 3191423 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 3 | 4767441 | 4767524 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 4 | 3215959 | 3216042 | + | NZ_LR134201.1 | Cedecea lapagei |
| 5 | 2270581 | 2270664 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 6 | 307746 | 307829 | - | NZ_CP038469.1 | Citrobacter tructae |
| 7 | 264247 | 264330 | + | NZ_CP053416.1 | Salmonella bongori |
| 8 | 2958031 | 2958114 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 9 | 2228982 | 2229065 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 10 | 2251806 | 2251889 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 11 | 3443478 | 3443561 | + | NZ_CP023525.1 | Cedecea neteri |
| 12 | 2775889 | 2775972 | + | NZ_LR134340.1 | Escherichia marmotae |
| 13 | 2947661 | 2947744 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 14 | 1654126 | 1654209 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 15 | 2823810 | 2823893 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 16 | 1299526 | 1299609 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 17 | 578727 | 578810 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 18 | 1643994 | 1644077 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 19 | 1226405 | 1226488 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 20 | 2404197 | 2404280 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 21 | 2376299 | 2376382 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 22 | 938268 | 938351 | + | NZ_CP033744.1 | Citrobacter freundii |
| 23 | 4123376 | 4123459 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 24 | 362845 | 362928 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 25 | 896556 | 896639 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 26 | 1914580 | 1914663 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 27 | 3224185 | 3224268 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 28 | 3265775 | 3265858 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 29 | 1103094 | 1103177 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 30 | 2868616 | 2868708 | + | NZ_AP014936.1 | Sulfurifustis variabilis |
| 31 | 1365759 | 1365842 | - | NZ_CP050150.1 | Hafnia alvei |
| 32 | 1356349 | 1356432 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 33 | 1154786 | 1154869 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 34 | 3622142 | 3622225 | - | NZ_CP011254.1 | Serratia fonticola |
| 35 | 2668988 | 2669071 | - | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 36 | 4116031 | 4116114 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 37 | 1210976 | 1211059 | + | NZ_CP023567.1 | Erwinia pyrifoliae |
| 38 | 1417142 | 1417225 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 39 | 721930 | 722013 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 40 | 3643277 | 3643360 | + | NZ_CP071320.1 | Serratia ureilytica |
| 41 | 2520746 | 2520829 | + | NZ_CP022987.1 | Pusillimonas thiosulfatoxidans |
| 42 | 2362790 | 2362873 | - | NZ_CP030265.1 | Skermanella pratensis |
| 43 | 2274723 | 2274818 | - | NZ_AP017928.1 | Methylocaldum marinum |
| 44 | 3070745 | 3070828 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 45 | 2021634 | 2021720 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 46 | 2480545 | 2480631 | - | NZ_CP041636.1 | Ferrovibrio terrae |
| 47 | 3372899 | 3372982 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 48 | 1805128 | 1805211 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 49 | 4828659 | 4828742 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 50 | 900668 | 900751 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 51 | 2238865 | 2238948 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 52 | 2800975 | 2801058 | + | NZ_CP009533.1 | Pseudomonas rhizosphaerae |
| 53 | 1806388 | 1806471 | + | NZ_CP018221.1 | Tardibacter chloracetimidivorans |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012257.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF09335.13 | 0.62 | 32 | 1690 | same-strand | SNARE associated Golgi protein |
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