Result : B1KFU3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Protein SlyX homolog |
| NCBI Accession ID | CP000961.1 |
| Organism | Shewanella woodyi (strain ATCC 51908 / MS32) |
| Left | 1278696 |
| Right | 1278908 |
| Strand | - |
| Nucleotide Sequence | ATGGAACAATTAGCACAACGAGTCGAAGATCTTGAGATGAAACTGGCTTTTCAGGAGAGCACCATCGATGTCCTTGATCAACAAGTGATCAAGCTCAATGACCTACTTGCAGAGCAGCAGCATCAACTACGCGTTCTTATCAGCAAATTACAAAGTGTAGAACCGAGTAATATGGCGACTCAAGCTGAAGAGACACCACCGCCACACTATTAA |
| Sequence | MEQLAQRVEDLEMKLAFQESTIDVLDQQVIKLNDLLAEQQHQLRVLISKLQSVEPSNMATQAEETPPPHY |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl01090. Profile Description: SlyX. hypothetical protein; Provisional |
| Pubmed ID | |
| Domain | CDD:412736 |
| Functional Category | Others |
| Uniprot ID | B1KFU3 |
| ORF Length (Amino Acid) | 70 |
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| Conservation Analysis |
No. of Species: 61
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1278696 | 1278908 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 2 | 1097514 | 1097726 | - | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 3 | 3463850 | 3464026 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 4 | 2971717 | 2971929 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 5 | 961672 | 961848 | - | NC_009092.1 | Shewanella loihica PV-4 |
| 6 | 4069936 | 4070148 | + | NZ_CP020472.1 | Shewanella japonica |
| 7 | 1026006 | 1026218 | - | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 8 | 4182096 | 4182308 | + | NC_016901.1 | Shewanella baltica OS678 |
| 9 | 570817 | 571029 | - | NZ_CP037952.1 | Parashewanella spongiae |
| 10 | 3718429 | 3718641 | + | NZ_CP022358.1 | Shewanella bicestrii |
| 11 | 2340369 | 2340581 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 12 | 3190834 | 3191046 | - | NZ_CP036200.1 | Shewanella maritima |
| 13 | 3586829 | 3587041 | + | NZ_CP037951.1 | Parashewanella tropica |
| 14 | 4263899 | 4264111 | + | NZ_CP034015.1 | Shewanella livingstonensis |
| 15 | 3877704 | 3877916 | + | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 16 | 3875284 | 3875496 | + | NZ_CP041036.1 | Shewanella polaris |
| 17 | 3475533 | 3475745 | + | NC_007954.1 | Shewanella denitrificans OS217 |
| 18 | 795983 | 796186 | - | NC_008700.1 | Shewanella amazonensis SB2B |
| 19 | 675237 | 675440 | - | NZ_CP069213.1 | Shewanella litorisediminis |
| 20 | 3825837 | 3826049 | + | NZ_CP046378.1 | Shewanella algae |
| 21 | 881918 | 882130 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 22 | 895582 | 895791 | - | NC_014012.1 | Shewanella violacea DSS12 |
| 23 | 1099194 | 1099406 | - | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 24 | 213177 | 213401 | - | NZ_CP020373.1 | Shewanella khirikhana |
| 25 | 1642888 | 1643058 | + | NZ_LT906448.1 | Pasteurella dagmatis |
| 26 | 1306729 | 1306905 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 27 | 2127553 | 2127729 | + | NZ_CP018804.1 | Histophilus somni |
| 28 | 371193 | 371369 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 29 | 40622 | 40798 | - | NZ_CP016605.1 | Bisgaardia hudsonensis |
| 30 | 508514 | 508684 | + | NZ_CP015029.1 | Frederiksenia canicola |
| 31 | 431932 | 432150 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 32 | 409734 | 409940 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 33 | 183076 | 183279 | - | NZ_CP009056.1 | Frischella perrara |
| 34 | 441655 | 441825 | - | NZ_LR134167.1 | Avibacterium volantium |
| 35 | 1666894 | 1667106 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 36 | 4209357 | 4209542 | + | NZ_CP025799.1 | Dickeya zeae |
| 37 | 447521 | 447712 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 38 | 465724 | 465906 | - | NZ_CP026377.1 | Mixta gaviniae |
| 39 | 4404189 | 4404401 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 40 | 4159507 | 4159734 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 41 | 460044 | 460262 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 42 | 363240 | 363425 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 43 | 444708 | 444926 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 44 | 391114 | 391296 | - | NZ_CP061511.1 | Mixta calida |
| 45 | 3626643 | 3626861 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 46 | 806873 | 807064 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 47 | 2085804 | 2086025 | + | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 48 | 3344919 | 3345089 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 49 | 1200132 | 1200323 | + | NZ_CP019706.1 | Pantoea alhagi |
| 50 | 2034572 | 2034793 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 51 | 4725304 | 4725507 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 52 | 3547461 | 3547679 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 53 | 439835 | 440053 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 54 | 4359954 | 4360130 | - | NZ_CP046670.1 | Alteromonas mediterranea |
| 55 | 3605931 | 3606134 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 56 | 3965737 | 3965940 | + | NZ_LR134340.1 | Escherichia marmotae |
| 57 | 2383838 | 2384041 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 58 | 3438559 | 3438762 | + | NZ_AP014857.1 | Escherichia albertii |
| 59 | 4360951 | 4361154 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 60 | 39118 | 39321 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 61 | 299949 | 300167 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010506.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00254.30 | 1.0 | 61 | 244.0 | opposite-strand | FKBP-type peptidyl-prolyl cis-trans isomerase |
| 2 | PF01346.20 | 0.98 | 60 | 283.5 | opposite-strand | Domain amino terminal to FKBP-type peptidyl-prolyl isomerase |
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