* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF07824.14
|
1.0
|
2
|
2225.0
|
opposite-strand
|
Type III secretion chaperone domain
|
2
|
PF05925.14
|
1.0
|
2
|
525.0
|
opposite-strand
|
Enterobacterial virulence protein IpgD
|
3
|
PF03577.17
|
1.0
|
2
|
3.0
|
opposite-strand
|
Peptidase family C69
|
4
|
PF02518.28
|
1.0
|
2
|
1641.0
|
opposite-strand
|
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
|
5
|
PF00512.27
|
1.0
|
2
|
1641.0
|
opposite-strand
|
His Kinase A (phospho-acceptor) domain
|
6
|
PF00672.27
|
1.0
|
2
|
1641.0
|
opposite-strand
|
HAMP domain
|
7
|
PF14501.8
|
1.0
|
2
|
1641.0
|
opposite-strand
|
GHKL domain
|
8
|
PF00072.26
|
1.0
|
2
|
2996.5
|
opposite-strand
|
Response regulator receiver domain
|
9
|
PF00486.30
|
1.0
|
2
|
2996.5
|
opposite-strand
|
Transcriptional regulatory protein, C terminal
|
10
|
PF00576.23
|
1.0
|
2
|
3812.5
|
same-strand
|
HIUase/Transthyretin family
|
11
|
PF01613.20
|
1.0
|
2
|
4451.0
|
opposite-strand
|
Flavin reductase like domain
|
++ More..