Result : EXP00412
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00412 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 1789405 |
| Right | 1789578 |
| Strand | - |
| Nucleotide Sequence | ATGAAGCGTAGTAGAACGGAAGTGGGGCGCTGGCGAATGCTACGTCAGGCGAGCCGCCGTAAAGCGCGTTGGCTTGAAGGGCAATCACGCCGTAATATGCGTATCCATACCATCAGGAAATGCATCTTTAATCGTCAGCGTAATTCATTACTCTTTGCGATTCACGGTGTGTGA |
| Sequence | MKRSRTEVGRWRMLRQASRRKARWLEGQSRRNMRIHTIRKCIFNRQRNSLLFAIHGV |
| Source of smORF | Ribo-seq |
| Function | The ORF matches to the profile of NF033701. Profile Description: YciY family protein. Members of the YciY family are named after the gene symbol given in E. coli K-12, but members of the family are found also in Salmonella, Klebsiella, Yersinia, Erwinia, etc. |
| Pubmed ID | Venturini et al 2020 |
| Domain | CDD:411291 |
| Functional Category | Conserved domain based functional assignment |
| Uniprot ID | A5A613 |
| ORF Length (Amino Acid) | 57 |
++ More..
| Conservation Analysis |
No. of Species: 144
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1832546 | 1832719 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 4343828 | 4344001 | - | NZ_CP053416.1 | Salmonella bongori |
| 3 | 1865649 | 1865822 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 4 | 403351 | 403524 | - | NZ_CP033744.1 | Citrobacter freundii |
| 5 | 1240794 | 1240967 | - | NZ_CP038469.1 | Citrobacter tructae |
| 6 | 4021339 | 4021512 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 7 | 2934217 | 2934390 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 4666737 | 4666910 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 9 | 1297020 | 1297193 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 2391048 | 2391221 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 11 | 1303843 | 1304016 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 12 | 1308788 | 1308961 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 13 | 1751769 | 1751942 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 14 | 2429627 | 2429800 | - | NZ_LR134340.1 | Escherichia marmotae |
| 15 | 736661 | 736834 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 16 | 1807349 | 1807522 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 17 | 1941550 | 1941723 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 18 | 2348757 | 2348930 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 19 | 1036449 | 1036622 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 20 | 2415284 | 2415457 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 21 | 1606096 | 1606269 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 22 | 2416851 | 2417024 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 23 | 3379852 | 3380025 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 24 | 2067313 | 2067486 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 25 | 2487103 | 2487285 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 26 | 4174732 | 4174905 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 27 | 492185 | 492358 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 28 | 2552764 | 2552937 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 29 | 1969659 | 1969838 | - | NZ_LR134201.1 | Cedecea lapagei |
| 30 | 448185 | 448358 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 31 | 2700100 | 2700273 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 32 | 2488934 | 2489107 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 33 | 2209539 | 2209712 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 34 | 496609 | 496782 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 35 | 2622604 | 2622777 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 36 | 2022245 | 2022418 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 37 | 2615394 | 2615567 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 38 | 2844832 | 2845005 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 39 | 2645966 | 2646139 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 40 | 4646192 | 4646365 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 41 | 3925435 | 3925608 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 42 | 2076828 | 2077007 | + | NZ_CP023525.1 | Cedecea neteri |
| 43 | 808023 | 808196 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 44 | 1431701 | 1431874 | - | NZ_CP023529.1 | Lelliottia amnigena |
| 45 | 2609168 | 2609341 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 46 | 2092008 | 2092181 | + | NZ_CP045845.1 | Kluyvera intermedia |
| 47 | 2735128 | 2735301 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 48 | 1846608 | 1846781 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 49 | 2581896 | 2582069 | - | NC_015968.1 | Enterobacter soli |
| 50 | 1316026 | 1316199 | + | NZ_AP014857.1 | Escherichia albertii |
| 51 | 3067743 | 3067916 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 52 | 2428957 | 2429130 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 53 | 2482688 | 2482861 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 54 | 2177379 | 2177552 | + | NZ_CP041247.1 | Raoultella electrica |
| 55 | 4118893 | 4119066 | - | NZ_CP040428.1 | Jejubacter calystegiae |
| 56 | 1984181 | 1984354 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 57 | 5007005 | 5007178 | - | NZ_CP026047.1 | Raoultella planticola |
| 58 | 2262629 | 2262802 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 59 | 2270342 | 2270515 | + | NZ_CP050508.1 | Raoultella terrigena |
| 60 | 2067211 | 2067384 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 61 | 2116138 | 2116311 | + | NZ_CP054254.1 | Klebsiella variicola |
| 62 | 3170260 | 3170433 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 63 | 1522080 | 1522259 | + | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 64 | 3530615 | 3530788 | + | NZ_CP019706.1 | Pantoea alhagi |
| 65 | 2404689 | 2404865 | - | NZ_LR134531.1 | Pragia fontium |
| 66 | 1542691 | 1542867 | + | NZ_LS483470.1 | Leminorella richardii |
| 67 | 1888701 | 1888874 | + | NZ_CP038853.1 | Pantoea vagans |
| 68 | 2168111 | 2168284 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 69 | 2352550 | 2352723 | - | NZ_CP061511.1 | Mixta calida |
| 70 | 1906510 | 1906683 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 71 | 4357983 | 4358165 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 72 | 2455270 | 2455443 | - | NZ_CP026377.1 | Mixta gaviniae |
| 73 | 619613 | 619786 | - | NZ_CP049115.1 | Pantoea stewartii |
| 74 | 2188673 | 2188846 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 75 | 1698987 | 1699169 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 76 | 1527853 | 1528032 | + | NZ_CP029185.2 | Limnobaculum parvum |
| 77 | 2283383 | 2283562 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 78 | 1553382 | 1553555 | - | NZ_CP028271.1 | Mixta intestinalis |
| 79 | 2926417 | 2926599 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 80 | 540826 | 541002 | + | NZ_CP009787.1 | Yersinia rohdei |
| 81 | 2173441 | 2173617 | - | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 82 | 4083907 | 4084083 | + | NZ_CP007230.1 | Yersinia similis |
| 83 | 2700332 | 2700505 | - | NC_014306.1 | Erwinia billingiae Eb661 |
| 84 | 2204315 | 2204491 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 85 | 3219511 | 3219690 | + | NZ_CP026364.1 | Proteus hauseri |
| 86 | 3374207 | 3374383 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 87 | 2181471 | 2181668 | - | NZ_CP015581.1 | Tatumella citrea |
| 88 | 2393229 | 2393408 | - | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 89 | 1965998 | 1966174 | - | NZ_CP032487.1 | Yersinia hibernica |
| 90 | 2488356 | 2488532 | - | NZ_CP050150.1 | Hafnia alvei |
| 91 | 3544714 | 3544890 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 92 | 1635651 | 1635827 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 93 | 2288783 | 2288956 | + | NC_012962.1 | Photorhabdus asymbiotica |
| 94 | 1631925 | 1632104 | + | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 95 | 1212219 | 1212398 | - | NZ_CP016176.1 | Xenorhabdus hominickii |
| 96 | 2392892 | 2393068 | - | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 97 | 2544993 | 2545169 | - | NZ_CP034938.1 | Pectobacterium odoriferum |
| 98 | 1147495 | 1147671 | + | NZ_CP017482.1 | Pectobacterium polaris |
| 99 | 2134195 | 2134371 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 100 | 2451806 | 2451982 | - | NZ_CP051652.1 | Pectobacterium carotovorum |
| 101 | 184975 | 185151 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 102 | 3929363 | 3929539 | + | NZ_CP047495.1 | Pectobacterium brasiliense |
| 103 | 1623139 | 1623315 | - | NZ_CP015749.1 | Pectobacterium parmentieri |
| 104 | 4122400 | 4122576 | + | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 105 | 2456749 | 2456925 | + | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 106 | 2337417 | 2337593 | + | NZ_CP038498.1 | Pectobacterium punjabense |
| 107 | 1950243 | 1950419 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 108 | 2405152 | 2405328 | + | NZ_CP065044.1 | Pectobacterium aroidearum |
| 109 | 2238685 | 2238861 | + | NZ_CP071320.1 | Serratia ureilytica |
| 110 | 2860458 | 2860634 | - | NZ_CP038662.1 | Serratia nematodiphila |
| 111 | 2157903 | 2158079 | - | NZ_CP016948.1 | Serratia surfactantfaciens |
| 112 | 2899978 | 2900154 | - | NZ_CP048784.1 | Serratia liquefaciens |
| 113 | 2934104 | 2934280 | - | NZ_LR134494.1 | Serratia quinivorans |
| 114 | 321869 | 322048 | + | NZ_CP011078.1 | Yersinia ruckeri |
| 115 | 2920925 | 2921101 | - | NC_015567.1 | Serratia plymuthica AS9 |
| 116 | 5012710 | 5012886 | - | NZ_CP011254.1 | Serratia fonticola |
| 117 | 2313964 | 2314140 | - | NC_012880.1 | Musicola paradisiaca Ech703 |
| 118 | 2889283 | 2889459 | - | NZ_LT906479.1 | Serratia ficaria |
| 119 | 2140680 | 2140856 | + | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 120 | 548668 | 548844 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 121 | 2104215 | 2104388 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 122 | 2165340 | 2165516 | + | NZ_CP046293.1 | Yersinia intermedia |
| 123 | 2439560 | 2439736 | - | NZ_CP043727.1 | Yersinia canariae |
| 124 | 1435554 | 1435733 | - | NC_010554.1 | Proteus mirabilis HI4320 |
| 125 | 1806770 | 1806943 | + | NC_010694.1 | Erwinia tasmaniensis Et1/99 |
| 126 | 2914450 | 2914623 | - | NZ_CP029736.1 | Providencia rettgeri |
| 127 | 1654291 | 1654464 | - | NZ_CP031123.2 | Providencia huaxiensis |
| 128 | 3497990 | 3498166 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 129 | 2210892 | 2211065 | + | NZ_CP048796.1 | Providencia vermicola |
| 130 | 2139652 | 2139825 | + | NZ_LS483422.1 | Providencia heimbachae |
| 131 | 1814014 | 1814190 | - | NZ_CP014137.1 | Brenneria goodwinii |
| 132 | 3018903 | 3019076 | + | NZ_CP023536.1 | Providencia alcalifaciens |
| 133 | 4168875 | 4169051 | - | NZ_CP065640.1 | Serratia rubidaea |
| 134 | 1431720 | 1431899 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 135 | 417479 | 417655 | - | NZ_CP009460.1 | Dickeya fangzhongdai |
| 136 | 2287230 | 2287406 | + | NZ_CP025799.1 | Dickeya zeae |
| 137 | 1871339 | 1871515 | - | NZ_CP065534.1 | Lonsdalea populi |
| 138 | 2346012 | 2346188 | + | NC_014500.1 | Dickeya dadantii 3937 |
| 139 | 2513719 | 2513895 | - | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 140 | 2279842 | 2280018 | - | NZ_LT615367.1 | Dickeya aquatica |
| 141 | 2306378 | 2306554 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 142 | 4498155 | 4498331 | + | NZ_CP015137.1 | Dickeya solani IPO 2222 |
| 143 | 3105832 | 3106008 | - | NZ_CP023009.1 | Lonsdalea britannica |
| 144 | 2216454 | 2216630 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 145 | 2087807 | 2087986 | + | NZ_CP006569.1 | Sodalis praecaptivus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03061.24 | 0.68 | 98 | 2160 | opposite-strand | Thioesterase superfamily |
| 2 | PF16031.7 | 0.81 | 117 | 1365.0 | same-strand | TonB polyproline region |
| 3 | PF03544.16 | 0.76 | 110 | 1366 | same-strand | Gram-negative bacterial TonB protein C-terminal |
| 4 | PF03795.16 | 0.79 | 114 | 1211 | opposite-strand | YCII-related domain |
| 5 | PF13091.8 | 1.0 | 144 | 163 | opposite-strand | PLD-like domain |
| 6 | PF00614.24 | 1.0 | 144 | 163 | opposite-strand | Phospholipase D Active site motif |
| 7 | PF13396.8 | 1.0 | 144 | 163 | opposite-strand | Phospholipase D-nuclease N-terminal |
| 8 | PF04269.14 | 1.0 | 144 | 1677 | opposite-strand | Protein of unknown function, DUF440 |
| 9 | PF00005.29 | 0.92 | 132 | 3016.5 | same-strand | ABC transporter |
| 10 | PF08352.14 | 0.92 | 132 | 3017 | same-strand | Oligopeptide/dipeptide transporter, C-terminal region |
| 11 | PF02463.21 | 0.77 | 111 | 3144.0 | same-strand | RecF/RecN/SMC N terminal domain |
++ More..