Result : EXP00407
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00407 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 2969532 |
| Right | 2969711 |
| Strand | + |
| Nucleotide Sequence | ATGTTCACACCAGGCGATATCGTACAGCCCCGAATGGGTGGGCCGAAACTGAAAGTGATTGAAGTCAACGAGGATCATATTGTCGCGGTACAGGTCGGTAATGAACCGGGCGAAAAATTGATCCTCAAAGCGGCAGATGTCACCCCCTATTGCGAAGAGGGCGATTTTGGCGTGTGCTGA |
| Sequence | MFTPGDIVQPRMGGPKLKVIEVNEDHIVAVQVGNEPGEKLILKAADVTPYCEEGDFGVC |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | Venturini et al 2020 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 59 |
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| Conservation Analysis |
No. of Species: 46
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2946960 | 2947139 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 771670 | 771849 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 3550225 | 3550404 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 4 | 1590406 | 1590585 | + | NZ_CP033744.1 | Citrobacter freundii |
| 5 | 1204564 | 1204743 | - | NZ_CP050508.1 | Raoultella terrigena |
| 6 | 534825 | 535004 | + | NZ_CP026047.1 | Raoultella planticola |
| 7 | 1074592 | 1074771 | - | NZ_CP041247.1 | Raoultella electrica |
| 8 | 1158021 | 1158200 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 9 | 3636410 | 3636589 | + | NC_015968.1 | Enterobacter soli |
| 10 | 1119766 | 1119945 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 11 | 1274802 | 1274981 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 12 | 1385290 | 1385469 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 13 | 3937845 | 3938024 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 14 | 1075880 | 1076059 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 15 | 3629287 | 3629466 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 1379822 | 1380001 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 17 | 3732424 | 3732603 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 18 | 4739478 | 4739657 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 19 | 2353601 | 2353780 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 20 | 3596640 | 3596819 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 21 | 3648761 | 3648940 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 22 | 1099116 | 1099295 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 23 | 4215182 | 4215361 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 24 | 5139072 | 5139251 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 25 | 3999811 | 3999990 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 26 | 3373782 | 3373961 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 27 | 1678145 | 1678324 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 28 | 1182535 | 1182714 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 29 | 349166 | 349345 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 30 | 3640753 | 3640932 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 31 | 3289417 | 3289596 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 32 | 797700 | 797879 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 33 | 3498044 | 3498223 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 34 | 636904 | 637083 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 35 | 1036737 | 1036916 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 36 | 954879 | 955058 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 37 | 4747664 | 4747843 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 38 | 3775274 | 3775453 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 39 | 4245550 | 4245729 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 40 | 76695 | 76874 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 41 | 4105217 | 4105396 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 42 | 1145578 | 1145757 | - | NZ_CP054254.1 | Klebsiella variicola |
| 43 | 1142691 | 1142870 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 44 | 5086371 | 5086550 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 45 | 822112 | 822291 | - | NZ_LR134201.1 | Cedecea lapagei |
| 46 | 823919 | 824098 | - | NZ_CP023525.1 | Cedecea neteri |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01679.19 | 0.7 | 32 | 228.5 | opposite-strand | Proteolipid membrane potential modulator |
| 2 | PF00581.22 | 0.63 | 29 | 91 | same-strand | Rhodanese-like domain |
| 3 | PF00816.23 | 0.61 | 28 | 40.5 | opposite-strand | H-NS histone family |
| 4 | PF06610.15 | 0.98 | 45 | 937 | same-strand | L-alanine exporter |
| 5 | PF09400.12 | 1.0 | 46 | 1419.0 | opposite-strand | Protein of unknown function (DUF2002) |
| 6 | PF19029.2 | 0.93 | 43 | 1924 | same-strand | DUF883 C-terminal glycine zipper region |
| 7 | PF05957.15 | 0.93 | 43 | 1924 | same-strand | DUF883 N-terminal domain |
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