Result : EXP00401
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00401 |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
| Left | 1170429 |
| Right | 1170725 |
| Strand | + |
| Nucleotide Sequence | ATGGTAATGTCCGCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGACCATACCCATGACGTCATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGA |
| Sequence | MVMSAPGHIVYSSYNTLYGHSLSGGGLVILKALIISLTDHTHDVICGARSRVWRRFKKQAKAYKEANPQMCVRIIAFKRTRVMYTYNSRCYPWEDKKQ |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | Venturini et al 2020 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 98 |
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| Conservation Analysis |
No. of Species: 9
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1214095 | 1214391 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 3612557 | 3612853 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 4568574 | 4568870 | + | NZ_CP033744.1 | Citrobacter freundii |
| 4 | 1890501 | 1890797 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 5 | 3387730 | 3388026 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 6 | 545106 | 545402 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 7 | 3685672 | 3685968 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 8 | 1183658 | 1183954 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 1601440 | 1601736 | - | NZ_CP038469.1 | Citrobacter tructae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP033744.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00171.24 | 1.0 | 9 | 5680 | opposite-strand | Aldehyde dehydrogenase family |
| 2 | PF01619.20 | 1.0 | 9 | 5680 | opposite-strand | Proline dehydrogenase |
| 3 | PF14850.8 | 1.0 | 9 | 5680 | opposite-strand | DNA-binding domain of Proline dehydrogenase |
| 4 | PF18327.3 | 1.0 | 9 | 5680 | opposite-strand | Proline utilization A proline dehydrogenase N-terminal domain |
| 5 | PF00474.19 | 1.0 | 9 | 3769.5 | same-strand | Sodium:solute symporter family |
| 6 | PF02562.18 | 1.0 | 9 | -21 | same-strand | PhoH-like protein |
| 7 | PF13401.8 | 1.0 | 9 | -21 | same-strand | AAA domain |
| 8 | PF13604.8 | 0.89 | 8 | -21.0 | same-strand | AAA domain |
| 9 | PF02826.21 | 0.78 | 7 | 1454 | same-strand | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
| 10 | PF03239.16 | 0.67 | 6 | 2720.5 | same-strand | Iron permease FTR1 family |
| 11 | PF09375.12 | 0.67 | 6 | 1535.5 | same-strand | Imelysin |
| 12 | PF13473.8 | 0.67 | 6 | 1535.5 | same-strand | Cupredoxin-like domain |
| 13 | PF04261.14 | 0.67 | 6 | 246.5 | same-strand | Dyp-type peroxidase family |
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