Protein Information |
Information Type | Description |
---|---|
Protein name | EXP00401 |
NCBI Accession ID | NC_016810.1 |
Organism | Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344 |
Left | 1170429 |
Right | 1170725 |
Strand | + |
Nucleotide Sequence | ATGGTAATGTCCGCACCAGGACACATTGTTTACAGTAGTTACAACACCCTGTACGGACATTCTCTCTCCGGTGGTGGTCTTGTCATCTTAAAAGCTCTCATCATTTCCCTTACTGACCATACCCATGACGTCATATGTGGTGCGCGTAGCCGTGTGTGGCGTCGTTTCAAAAAGCAAGCTAAGGCTTACAAGGAAGCCAACCCTCAGATGTGTGTGCGCATAATCGCGTTCAAGAGAACGCGGGTGATGTATACCTACAACTCAAGGTGCTATCCATGGGAAGACAAAAAGCAGTGA |
Sequence | MVMSAPGHIVYSSYNTLYGHSLSGGGLVILKALIISLTDHTHDVICGARSRVWRRFKKQAKAYKEANPQMCVRIIAFKRTRVMYTYNSRCYPWEDKKQ |
Source of smORF | Ribo-seq |
Function | |
Pubmed ID | Venturini et al 2020 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 98 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1214095 | 1214391 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
2 | 3612557 | 3612853 | + | NZ_CP053416.1 | Salmonella bongori |
3 | 4568574 | 4568870 | + | NZ_CP033744.1 | Citrobacter freundii |
4 | 1890501 | 1890797 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
5 | 3387730 | 3388026 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
6 | 545106 | 545402 | - | NZ_CP044098.1 | Citrobacter portucalensis |
7 | 3685672 | 3685968 | - | NZ_CP045205.1 | Citrobacter telavivensis |
8 | 1183658 | 1183954 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
9 | 1601440 | 1601736 | - | NZ_CP038469.1 | Citrobacter tructae |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00171.24 | 1.0 | 9 | 5680 | opposite-strand | Aldehyde dehydrogenase family |
2 | PF01619.20 | 1.0 | 9 | 5680 | opposite-strand | Proline dehydrogenase |
3 | PF14850.8 | 1.0 | 9 | 5680 | opposite-strand | DNA-binding domain of Proline dehydrogenase |
4 | PF18327.3 | 1.0 | 9 | 5680 | opposite-strand | Proline utilization A proline dehydrogenase N-terminal domain |
5 | PF00474.19 | 1.0 | 9 | 3769.5 | same-strand | Sodium:solute symporter family |
6 | PF02562.18 | 1.0 | 9 | -21 | same-strand | PhoH-like protein |
7 | PF13401.8 | 1.0 | 9 | -21 | same-strand | AAA domain |
8 | PF13604.8 | 0.89 | 8 | -21.0 | same-strand | AAA domain |
9 | PF02826.21 | 0.78 | 7 | 1454 | same-strand | D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain |
10 | PF03239.16 | 0.67 | 6 | 2720.5 | same-strand | Iron permease FTR1 family |
11 | PF09375.12 | 0.67 | 6 | 1535.5 | same-strand | Imelysin |
12 | PF13473.8 | 0.67 | 6 | 1535.5 | same-strand | Cupredoxin-like domain |
13 | PF04261.14 | 0.67 | 6 | 246.5 | same-strand | Dyp-type peroxidase family |