Result : EXP00367
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00367 |
| NCBI Accession ID | NC_011916.1 |
| Organism | Caulobacter vibrioides NA1000 |
| Left | 220822 |
| Right | 221085 |
| Strand | - |
| Nucleotide Sequence | ATGACCGTGAGGTCCTTGGTTCCCGCCTCGCGGATCGCCGCGATCAGGTTCTCCGGAATGCCGCAGAGGCCGAACCCGCCGGCCATGATGGTCATGCCGTCGAACAAAAGCCCGGCAAGGGCTTCGACGGCGTCCTTCTTCACCTTGTCGACCATGGTGTCTCCCTGTTCCCAGACTTATACGTCTGGCGCTGGGCGCAGCGTGTCGCCCGAGCCGCGAATAAATTCAACCCTTGATGAATTATTTTCCCGAAGGGCTGCTTGA |
| Sequence | MTVRSLVPASRIAAIRFSGMPQRPNPPAMMVMPSNKSPARASTASFFTLSTMVSPCSQTYTSGAGRSVSPEPRINSTLDELFSRRAA |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 25078267 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 87 |
++ More..
| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 220822 | 221085 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 2 | 4334606 | 4334836 | + | NZ_CP027850.1 | Caulobacter segnis |
| 3 | 373316 | 373546 | - | NZ_CP024201.1 | Caulobacter mirabilis |
| 4 | 1008560 | 1008826 | + | NZ_CP026100.1 | Caulobacter flavus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011916.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00999.23 | 1.0 | 4 | 586.5 | same-strand | Sodium/hydrogen exchanger family |
| 2 | PF02254.20 | 1.0 | 4 | 586.5 | same-strand | TrkA-N domain |
| 3 | PF02525.19 | 0.75 | 3 | 0 | same-strand | Flavodoxin-like fold |
| 4 | PF01144.25 | 1.0 | 4 | 214.5 | opposite-strand | Coenzyme A transferase |
| 5 | PF13231.8 | 0.75 | 3 | 1300 | same-strand | Dolichyl-phosphate-mannose-protein mannosyltransferase |
| 6 | PF00593.26 | 0.75 | 3 | 3152 | opposite-strand | TonB dependent receptor |
| 7 | PF07715.17 | 0.75 | 3 | 3152 | opposite-strand | TonB-dependent Receptor Plug Domain |
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