Result : EXP00345
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00345 |
| NCBI Accession ID | NC_011916.1 |
| Organism | Caulobacter vibrioides NA1000 |
| Left | 1394783 |
| Right | 1394905 |
| Strand | + |
| Nucleotide Sequence | ATGATGGCGGCGAGGGTAACGAAGCCCATGAAGTTGGCCGCCAGCTTATCGTATCGGGTTGCGATGCGCCGGAAGTGCTTGATGCGGCTGAAGAAACGCTCGACGCGGTTTCTCTCCTTGTAG |
| Sequence | MMAARVTKPMKLAASLSYRVAMRRKCLMRLKKRSTRFLSL |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 25078267 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 40 |
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| Conservation Analysis |
No. of Species: 36
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3144760 | 3144882 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 2 | 2829102 | 2829224 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 3 | 1394783 | 1394905 | + | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 4 | 2275284 | 2275406 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 5 | 1419086 | 1419208 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 6 | 1018006 | 1018128 | - | NZ_CP022048.2 | Brevundimonas vesicularis |
| 7 | 1637564 | 1637671 | + | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 8 | 7366 | 7473 | + | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 9 | 1387039 | 1387146 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 10 | 1812314 | 1812421 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 11 | 3165328 | 3165435 | + | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 12 | 373232 | 373339 | + | NZ_CP035001.1 | Rhizobium acidisoli |
| 13 | 383775 | 383882 | + | NZ_CP035001.1 | Rhizobium acidisoli |
| 14 | 2431935 | 2432057 | + | NZ_CP012661.1 | Defluviimonas alba |
| 15 | 4033087 | 4033212 | + | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 16 | 238839 | 238946 | - | NZ_CP054025.1 | Rhizobium indicum |
| 17 | 664447 | 664554 | - | NZ_CP034463.1 | Streptomyces aquilus |
| 18 | 1423059 | 1423160 | - | NZ_CP045423.1 | Microvirga thermotolerans |
| 19 | 173418 | 173564 | - | NZ_LR723671.1 | Pseudorhizobium flavum |
| 20 | 7736 | 7843 | - | NZ_CP068424.1 | Gluconobacter sphaericus |
| 21 | 718170 | 718271 | + | NZ_CP020569.1 | Streptomyces gilvosporeus |
| 22 | 33433 | 33540 | - | NC_014819.1 | Asticcacaulis excentricus CB 48 |
| 23 | 2489572 | 2489691 | + | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 24 | 2707993 | 2708112 | - | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 25 | 2654625 | 2654744 | - | NZ_CP022221.1 | Bradyrhizobium zhanjiangense |
| 26 | 3437407 | 3437532 | - | NZ_LR593886.1 | Gemmata massiliana |
| 27 | 3492823 | 3492945 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 28 | 25072 | 25182 | - | NZ_CP012407.1 | Azospirillum thiophilum |
| 29 | 193381 | 193491 | - | NZ_CP012403.1 | Azospirillum thiophilum |
| 30 | 241250 | 241354 | - | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 31 | 2042422 | 2042526 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 32 | 3046892 | 3046996 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 33 | 77777 | 77881 | - | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 34 | 24415 | 24522 | - | NC_003155.5 | Streptomyces avermitilis MA-4680 = NBRC 14893 |
| 35 | 378630 | 378737 | + | NZ_CP059991.1 | Streptomyces gardneri |
| 36 | 1032961 | 1033086 | - | NZ_CP051131.1 | Parasphingopyxis algicola |
| 37 | 1941477 | 1941581 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 38 | 123148 | 123258 | + | NC_008757.1 | Polaromonas naphthalenivorans CJ2 |
| 39 | 626764 | 626886 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 40 | 565890 | 566012 | + | NC_008781.1 | Polaromonas naphthalenivorans CJ2 |
| 41 | 19431 | 19538 | + | NZ_CP068421.1 | Gluconobacter sphaericus |
| 42 | 2487323 | 2487433 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 43 | 2067979 | 2068089 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 44 | 5886127 | 5886237 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 45 | 3568728 | 3568838 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 46 | 3749798 | 3749908 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 47 | 4201356 | 4201466 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 48 | 6490372 | 6490482 | + | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 49 | 121188 | 121298 | - | NZ_CP023865.1 | Actinoplanes teichomyceticus ATCC 31121 |
| 50 | 96713 | 96832 | + | NC_010580.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 51 | 2759272 | 2759376 | - | NC_007650.1 | Burkholderia thailandensis E264 |
| 52 | 4933019 | 4933126 | - | NZ_CP045298.1 | Paenibacillus brasilensis |
| 53 | 276674 | 276775 | + | NC_017791.1 | Deinococcus gobiensis I-0 |
| 54 | 629337 | 629441 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 55 | 3687389 | 3687493 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 56 | 3635917 | 3636021 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 57 | 2541542 | 2541646 | - | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 58 | 3309860 | 3309964 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 59 | 3432434 | 3432538 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 60 | 4304748 | 4304852 | + | NZ_CP043476.1 | Xanthomonas hyacinthi |
| 61 | 25113 | 25232 | + | NZ_CP038257.1 | Microbacterium sediminis |
| 62 | 4359573 | 4359680 | + | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 63 | 75424 | 75531 | - | NZ_CP068420.1 | Gluconobacter sphaericus |
| 64 | 347544 | 347651 | + | NZ_CP013502.1 | Rhizobium esperanzae |
| 65 | 1832504 | 1832617 | + | NZ_CP014229.1 | Desulfovibrio fairfieldensis |
| 66 | 18227 | 18334 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 67 | 1106469 | 1106576 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 68 | 1686770 | 1686889 | - | NC_017033.1 | Frateuria aurantia DSM 6220 |
| 69 | 1533306 | 1533425 | - | NC_017033.1 | Frateuria aurantia DSM 6220 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011916.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13586.8 | 0.75 | 27 | -107.0 | opposite-strand | Transposase DDE domain |
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