* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_011916.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02786.19
|
0.67
|
2
|
2993.0
|
opposite-strand
|
Carbamoyl-phosphate synthase L chain, ATP binding domain
|
2
|
PF02787.21
|
0.67
|
2
|
2993.0
|
opposite-strand
|
Carbamoyl-phosphate synthetase large chain, oligomerisation domain
|
3
|
PF02142.24
|
0.67
|
2
|
2993.0
|
opposite-strand
|
MGS-like domain
|
4
|
PF02222.24
|
0.67
|
2
|
2993.0
|
opposite-strand
|
ATP-grasp domain
|
5
|
PF02655.16
|
0.67
|
2
|
2993.0
|
opposite-strand
|
ATP-grasp domain
|
6
|
PF01734.24
|
0.67
|
2
|
419.0
|
opposite-strand
|
Patatin-like phospholipase
|
7
|
PF00313.24
|
0.67
|
2
|
253.5
|
opposite-strand
|
'Cold-shock' DNA-binding domain
|
8
|
PF01066.23
|
1.0
|
3
|
912
|
opposite-strand
|
CDP-alcohol phosphatidyltransferase
|
9
|
PF07536.16
|
0.67
|
2
|
2425.0
|
same-strand
|
HWE histidine kinase
|
10
|
PF07568.14
|
0.67
|
2
|
2425.0
|
same-strand
|
Histidine kinase
|
++ More..