* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00152.22
|
1.0
|
4
|
4532
|
same-strand
|
tRNA synthetases class II (D, K and N)
|
2
|
PF01336.27
|
1.0
|
4
|
4532
|
same-strand
|
OB-fold nucleic acid binding domain
|
3
|
PF00472.22
|
1.0
|
4
|
3641
|
same-strand
|
RF-1 domain
|
4
|
PF02272.21
|
1.0
|
4
|
1600
|
same-strand
|
DHHA1 domain
|
5
|
PF01368.22
|
1.0
|
4
|
1600
|
same-strand
|
DHH family
|
6
|
PF17768.3
|
1.0
|
4
|
1600
|
same-strand
|
RecJ OB domain
|
7
|
PF13098.8
|
1.0
|
4
|
884
|
same-strand
|
Thioredoxin-like domain
|
8
|
PF10411.11
|
1.0
|
4
|
884
|
same-strand
|
Disulfide bond isomerase protein N-terminus
|
9
|
PF00589.24
|
1.0
|
4
|
-37
|
same-strand
|
Phage integrase family
|
10
|
PF02899.19
|
1.0
|
4
|
-37
|
same-strand
|
Phage integrase, N-terminal SAM-like domain
|
11
|
PF13495.8
|
1.0
|
4
|
-37
|
same-strand
|
Phage integrase, N-terminal SAM-like domain
|
12
|
PF00258.27
|
1.0
|
4
|
93
|
opposite-strand
|
Flavodoxin
|
13
|
PF07254.14
|
1.0
|
4
|
654
|
same-strand
|
Membrane-bound toxin component of toxin-antitoxin system
|
14
|
PF03937.18
|
1.0
|
4
|
1042
|
same-strand
|
Flavinator of succinate dehydrogenase
|
15
|
PF03006.22
|
1.0
|
4
|
2617
|
same-strand
|
Haemolysin-III related
|
++ More..