ProsmORF-pred
Result : EXP00312
Protein Information
Information Type Description
Protein name EXP00312
NCBI Accession ID NC_000913.3
Organism Escherichia coli str. K-12 substr. MG1655
Left 3922317
Right 3922367
Strand -
Nucleotide Sequence GTGGATTGCTGTTCAGCCTCAAAGACCCCTTCTGGGGCGTCTCTGCAATAA
Sequence VDCCSASKTPSGASLQ
Source of smORF Ribo-seq
Function
Pubmed ID 30904393 27013550
Domain
Functional Category Function not yet assigned
Uniprot ID
ORF Length (Amino Acid) 16
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Conservation Analysis
Conservation Analysis
No. of Species: 6
Sr.No. Left Position Right Position Strand NCBI Accession id Species Name
1 4715886 4715936 - NC_002695.2 Escherichia coli O157:H7 str. Sakai
2 3922317 3922367 - NC_000913.3 Escherichia coli str. K-12 substr. MG1655
3 3929584 3929634 - NC_004337.2 Shigella flexneri 2a str. 301
4 4247658 4247708 - NZ_CP061527.1 Shigella dysenteriae
5 3889201 3889251 - NZ_AP014857.1 Escherichia albertii
6 4420743 4420793 + NZ_LR134340.1 Escherichia marmotae
7 2850509 2850559 + NZ_CP057657.1 Escherichia fergusonii
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Neighborhood Conservation Analysis
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Conservation Analysis
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. Domain Co-occurrence Frequency No. of species in which domain occurs with smORF Median distance b/w smORF and domain bearing ORFs Orientation relative to smORF PFAM Information
1 PF00213.20 1.0 6 1914 same-strand ATP synthase delta (OSCP) subunit
2 PF00430.20 1.0 6 1429 same-strand ATP synthase B/B' CF(0)
3 PF00137.23 1.0 6 1128 same-strand ATP synthase subunit C
4 PF00119.22 1.0 6 266 same-strand ATP synthase A chain
5 PF03899.17 1.0 6 -50 same-strand ATP synthase I chain
6 PF02527.17 1.0 6 690 same-strand rRNA small subunit methyltransferase G
7 PF01134.24 1.0 6 1377 same-strand Glucose inhibited division protein A
8 PF13932.8 1.0 6 1377 same-strand tRNA modifying enzyme MnmG/GidA C-terminal domain
9 PF00258.27 1.0 6 3645 same-strand Flavodoxin
10 PF01037.23 1.0 6 4178 same-strand Lrp/AsnC ligand binding domain
11 PF13412.8 1.0 6 4178 same-strand Winged helix-turn-helix DNA-binding
12 PF13404.8 1.0 6 4178 same-strand AsnC-type helix-turn-helix domain
13 PF03590.17 0.67 4 4788 opposite-strand Aspartate-ammonia ligase
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