* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF02355.18
|
1.0
|
7
|
2160
|
opposite-strand
|
Protein export membrane protein
|
2
|
PF07549.16
|
1.0
|
7
|
1636.5
|
opposite-strand
|
SecD/SecF GG Motif
|
3
|
PF01844.25
|
0.71
|
5
|
1058.0
|
opposite-strand
|
HNH endonuclease
|
4
|
PF03502.15
|
1.0
|
7
|
-3.0
|
same-strand
|
Nucleoside-specific channel-forming protein, Tsx
|
5
|
PF11622.10
|
1.0
|
7
|
201.0
|
same-strand
|
Protein of unknown function (DUF3251)
|
6
|
PF03477.18
|
1.0
|
7
|
891.0
|
opposite-strand
|
ATP cone domain
|
7
|
PF01872.19
|
1.0
|
7
|
1344.0
|
opposite-strand
|
RibD C-terminal domain
|
8
|
PF00383.25
|
1.0
|
7
|
1344.0
|
opposite-strand
|
Cytidine and deoxycytidylate deaminase zinc-binding region
|
9
|
PF14437.8
|
0.71
|
5
|
1344.0
|
opposite-strand
|
MafB19-like deaminase
|
10
|
PF00885.21
|
1.0
|
7
|
2536.0
|
opposite-strand
|
6,7-dimethyl-8-ribityllumazine synthase
|
11
|
PF01029.20
|
1.0
|
7
|
3026.0
|
opposite-strand
|
NusB family
|
12
|
PF02699.17
|
0.71
|
5
|
4391
|
opposite-strand
|
Preprotein translocase subunit
|
13
|
PF13721.8
|
1.0
|
7
|
2556
|
opposite-strand
|
SecD export protein N-terminal TM region
|
++ More..