Result : EXP00299
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00299 |
| NCBI Accession ID | NC_000913.3 |
| Organism | Escherichia coli str. K-12 substr. MG1655 |
| Left | 1687903 |
| Right | 1688133 |
| Strand | - |
| Nucleotide Sequence | ATGATAAATATGTGGCGCTGCAATTCCTGCGTAACTCCGACATCGCGGCGAAAGGCGTTCTGCCAACCTGTCAGGATACCGGCACCGCGATTATTGTTGGTAAAAAAGGGCAGCGTGTATGGACCGGTGGTGGTGATGAAGCGGCGCTGGCGCGCGGTGTCTATAACACTTATATCGAAGATAATCTGCGCTACTCGCAAAACGCGCCGCTGGATATGTATAAAGAAGTGA |
| Sequence | MINMWRCNSCVTPTSRRKAFCQPVRIPAPRLLLVKKGSVYGPVVVMKRRWRAVSITLISKIICATRKTRRWICIKK |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 27013550 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 76 |
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| Conservation Analysis |
No. of Species: 40
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1664283 | 1664513 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 2 | 1687903 | 1688133 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 3 | 2287841 | 2288071 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 4 | 1940034 | 1940264 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 5 | 1631497 | 1631685 | - | NZ_AP014857.1 | Escherichia albertii |
| 6 | 7454 | 7675 | + | NZ_CP033744.1 | Citrobacter freundii |
| 7 | 74660 | 74881 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 8 | 1969809 | 1970027 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 9 | 887468 | 887719 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 10 | 66141 | 66359 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 11 | 2627191 | 2627409 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 12 | 846247 | 846468 | + | NZ_CP038469.1 | Citrobacter tructae |
| 13 | 3855999 | 3856229 | - | NZ_CP009787.1 | Yersinia rohdei |
| 14 | 2197847 | 2198035 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 15 | 453321 | 453542 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 16 | 3612346 | 3612567 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 17 | 885916 | 886134 | - | NZ_LT615367.1 | Dickeya aquatica |
| 18 | 3692398 | 3692619 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 19 | 3595495 | 3595761 | + | NZ_LR134201.1 | Cedecea lapagei |
| 20 | 2738599 | 2738865 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 21 | 2442773 | 2442994 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 22 | 2237599 | 2237850 | - | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 23 | 2303548 | 2303736 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 24 | 3532006 | 3532224 | + | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 25 | 1736278 | 1736496 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 26 | 3119985 | 3120215 | + | NZ_CP032487.1 | Yersinia hibernica |
| 27 | 3697424 | 3697654 | + | NZ_CP046293.1 | Yersinia intermedia |
| 28 | 923752 | 924003 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 29 | 931285 | 931473 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 30 | 3706012 | 3706263 | + | NC_012912.1 | Dickeya chrysanthemi Ech1591 |
| 31 | 3228871 | 3229092 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 32 | 3698692 | 3698922 | + | NZ_CP011118.1 | Yersinia enterocolitica |
| 33 | 1016777 | 1017007 | - | NZ_CP043727.1 | Yersinia canariae |
| 34 | 608934 | 609152 | - | NZ_CP065640.1 | Serratia rubidaea |
| 35 | 2813749 | 2813937 | - | NZ_CP023525.1 | Cedecea neteri |
| 36 | 1942308 | 1942544 | + | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 37 | 217070 | 217258 | + | NZ_CP067059.1 | Rahnella aceris |
| 38 | 945353 | 945604 | - | NZ_CP025799.1 | Dickeya zeae |
| 39 | 2595836 | 2596057 | - | NZ_CP007230.1 | Yersinia similis |
| 40 | 1713396 | 1713599 | - | NZ_CP023567.1 | Erwinia pyrifoliae |
| 41 | 3627939 | 3628160 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 42 | 238102 | 238368 | + | NC_017553.1 | Pantoea ananatis PA13 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05683.14 | 1.0 | 40 | -221.0 | same-strand | Fumarase C-terminus |
| 2 | PF05681.16 | 1.0 | 40 | -221.0 | same-strand | Fumarate hydratase (Fumerase) |
++ More..